Locus 7129

Sequence ID	X_DroMel_CAF1
Location	17,892,263 – 17,892,361
Length	98
Max. P	0.569898

overview

Window 5

Location	17,892,263 – 17,892,361
Length	98
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	76.10
Mean single sequence MFE	-18.15
Consensus MFE	-9.75
Energy contribution	-9.38
Covariance contribution	-0.38
Combinations/Pair	1.29
Mean z-score	-1.91
Structure conservation index	0.54
SVM decision value	0.07
SVM RNA-class probability	0.569898
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17892263 98 - 22224390
----------CCACUCCCAUUCCUCUCAUCUGCUCUUC----UUCACUCGCUUAUUGUGAGUACACUGAGAAUACUUU-U-UUGGUUUUUUAGGCAUGAAGCU-UAAGAGAUAUU
----------......................((((((----(((((((((.....))))))...(((((((.(((..-.-..))))))))))....))))..-.)))))..... ( -20.70)
>DroSec_CAF1 156306 101 - 1
----------CCACUUCCAUUCC--UCAUCUGCUCUUCCCACUUCACUCGCUUAUUGUGGGUACACUGAGAAUACUUUAU-UUGGUUUUUCAGGCUUGAAACU-UAAGAGAUAUU
----------.............--.......(((((.....(((((((((.....))))))...(((((((.(((....-..))))))))))....)))...-.)))))..... ( -19.50)
>DroEre_CAF1 151865 106 - 1
-----UCACCCUACUCCCGUUCC--UCAUCUGCUCUUCCCACUUCACUCGCUUAUUGUGGGUACACCGAGAAUAUUAU-U-UUGGUUUUUCAAGUUAAAAUCUCUUAGGAAUAUA
-----.............(((((--(...........(((((..............)))))......((((...(((.-(-((((....))))).)))..))))..))))))... ( -18.34)
>DroYak_CAF1 152599 110 - 1
CCCAUUCCCCCUACUC--AUUCC--CCAUCUACUCUUCCCACUUCACUCGCUUAUUGUGGGUACACUGAGAAUACUUU-UGUUGGAUUUUUAAAUUAUUUUCUCUUAGGAUUAUU
.........((((...--.....--............(((((..............)))))......(((((....((-((.........)))).....))))).))))...... ( -14.04)
>consensus
__________CCACUCCCAUUCC__UCAUCUGCUCUUCCCACUUCACUCGCUUAUUGUGGGUACACUGAGAAUACUUU_U_UUGGUUUUUCAAGCUAGAAUCU_UAAGAAAUAUU
..........................................(((((((((.....))))))...(((((((..(........)..)))))))..............)))..... ( -9.75 =  -9.38 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:53 2006