Locus 7109

Sequence ID X_DroMel_CAF1
Location 17,852,529 – 17,852,631
Length 102
Max. P 0.878542
window11606

overview

Window 6

Location 17,852,529 – 17,852,631
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 85.60
Mean single sequence MFE -25.76
Consensus MFE -20.22
Energy contribution -20.02
Covariance contribution -0.20
Combinations/Pair 1.23
Mean z-score -1.98
Structure conservation index 0.78
SVM decision value 0.90
SVM RNA-class probability 0.878542
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17852529 102 + 22224390
GUUGUUAUCGGGUAUAAUGACCGUUACACACAUGGUUAUAAACUCGAAUCGGUUGCUUAAAAUUUCUUUCGUUUUUGGUUUGAGUACCUGCUUUGCAUUAAU
..(((...(((((...((((((((.......))))))))..(((((((((((..((..((......))..))..))))))))))))))))....)))..... ( -25.50)
>DroSec_CAF1 110227 101 + 1
GUUGUUAUCGGGUAUGCUGACCGUUAAACAAACGGUUAAAAACUCGAAUCGGUUGCUAGAAAUUUCUUUCGAUUUUGGUUUGAGUACCUACUUUCCAUUUA-
.........((((((..((((((((.....)))))))).(((((.(((((((..(..(....)..)..))))))).)))))..))))))............- ( -26.10)
>DroSim_CAF1 86139 101 + 1
GUUGUUAUCGGGUAUGCUGACCGUUACACACACGGUUAAAAACUCGAAUCGGUUGCUCAAAAUUUCUUUCGAUUUUGGUUUGAGUACCUACUUUCCAUUUA-
.......((((((.(..(((((((.......))))))).).))))))...(((.(((((((...((....))......)))))))))).............- ( -23.80)
>DroEre_CAF1 113835 101 + 1
GUCGUUAUCGGGUAUGUUGACCGUUACACUUACGGUGAUGAACUCGAAUCGGUUGACCAGAUUUUCUUUCAAUUUCGGUUCGAGUACCUACUUUCCAUUUG-
.(((((((((....(((........)))....)))))))))(((((((((((((((..((.....)).)))))..))))))))))................- ( -27.50)
>DroYak_CAF1 112078 100 + 1
GUCGUUAUCGGGUAUGGUGACCGUUACGCUUACGGUUAUGAACCCGAAUCGGUUG-CUAAAUUUUUUUUCCGUUUUGGUUUGAGUACCUACUUUCCAUUUA-
.(((...((((((.(.((((((((.......)))))))).)))))))..)))...-...................(((...((((....)))).)))....- ( -25.90)
>consensus
GUUGUUAUCGGGUAUGCUGACCGUUACACACACGGUUAUAAACUCGAAUCGGUUGCUCAAAAUUUCUUUCGAUUUUGGUUUGAGUACCUACUUUCCAUUUA_
.........((((((..(((((((.......))))))).(((((.(((((((..(..........)..))))))).)))))..))))))............. (-20.22 = -20.02 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:19 2006