| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 316,586 – 316,686 |
| Length | 100 |
| Max. P | 0.689444 |
| Location | 316,586 – 316,686 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 80.47 |
| Mean single sequence MFE | -22.12 |
| Consensus MFE | -15.16 |
| Energy contribution | -15.36 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.689444 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 316586 100 + 22224390 --------UACUCAGGUUUGUUGGAAACUACCUGAGAGGAAGGAUCAAAAAAGUUUAUUGUAGCACUCGAAAACUUGUUUGCACAGAUA-------GA-CCUAAGCUCCAAAAAAA- --------..(((((((.....(....).))))))).....(((........(((((((...(((..(((....)))..)))...))))-------))-)......))).......- ( -23.84) >DroSec_CAF1 59560 100 + 1 --------UACUCAGGUCUGUUGGAAACUACCUGAGAGGAAGGAUCAAAAAAGUUUAUUGUAGCACACGAAAACUUGUUUGCGCAGAUA-------UA-CCUAAGCUCCAAAAAAA- --------..(((((((.....(....).))))))).....(((........((.((((...(((.((((....)))).)))...))))-------.)-)......))).......- ( -22.14) >DroSim_CAF1 80195 100 + 1 --------UACUCAGGUCUGUUGGAAACUACCUGAGAGGAAGGAUCAAAAAAGUUUAUUGUAGCACACGAAAACUUGUUUGCGCAGAUA-------UA-CCUAAGCUCCAAAAAAA- --------..(((((((.....(....).))))))).....(((........((.((((...(((.((((....)))).)))...))))-------.)-)......))).......- ( -22.14) >DroEre_CAF1 60244 108 + 1 --------UACUCAGGUCUGUUGGAAACUACCUGAGAGGCCGGAUCAAAAAAGUUUAUUGUAGCACACGAAAACUUGUUUGCACAGACAGACCUAAGA-CCUAAGCUCCAAAAAAAC --------..((.(((((((((.((..(..((.....))..)..))............(((.(((.((((....)))).))))))))))))))).)).-.................. ( -24.50) >DroYak_CAF1 80975 102 + 1 --------UACUCAGGUCUGUUGGAAACUACCUGAGAGCCCGGCUCAAAAAAGUUUAUUGUAGCACAUGAAAACUUGUUUGCACAGAC------AAGA-CCUAAGCUCCAAAAAAAU --------...((((((.....(....).))))))((((...((((((.........))).))).........(((((((....))))------))).-.....))))......... ( -22.70) >DroAna_CAF1 76521 110 + 1 ACUGACAGGACUCAGGUCUCCGUAGCACUACCUGAGAACC-----CGAAAAAGUUUAUUGUAGCAGACCGAAACUAGUUUCCAAAAACAGAC--AAUAUCUUAAGCUUCUCGAAAAC .......((.(((((((............)))))))..))-----(((..(((((((((((........((((....)))).........))--)))).....))))).)))..... ( -17.43) >consensus ________UACUCAGGUCUGUUGGAAACUACCUGAGAGGAAGGAUCAAAAAAGUUUAUUGUAGCACACGAAAACUUGUUUGCACAGACA_______GA_CCUAAGCUCCAAAAAAA_ ..........(((((((.....(....).)))))))...............((((((((((.(((.((((....)))).)))))))...............)))))).......... (-15.16 = -15.36 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:06 2006