Locus 7074

Sequence ID X_DroMel_CAF1
Location 17,737,943 – 17,738,052
Length 109
Max. P 0.720294
window11552

overview

Window 2

Location 17,737,943 – 17,738,052
Length 109
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -36.30
Consensus MFE -36.30
Energy contribution -36.30
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 1.00
SVM decision value 0.40
SVM RNA-class probability 0.720294
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17737943 109 - 22224390
UGUAGAAAGAGAUAGAGAGAAGAGCGCUUAAUACUUCUGCUGCGGCACCAAUUGGGUGGCUAUGCCAGCGAAACUGGAGGCCACCGUGUUGAUCUCGACCUGCUUUAUC
.((((...(((((..(((((((...........))))).)).(((((((....)(((((((...((((.....)))).))))))))))))))))))...))))...... ( -36.30)
>DroSec_CAF1 32108 109 - 1
UGUAGAAAGAGAUAGAGAGAAGAGCGCUUAAUACUUCUGCUGCGGCACCAAUUGGGUGGCUAUGCCAGCGAAACUGGAGGCCACCGUGUUGAUCUCGACCUGCUUUAUC
.((((...(((((..(((((((...........))))).)).(((((((....)(((((((...((((.....)))).))))))))))))))))))...))))...... ( -36.30)
>DroSim_CAF1 33288 109 - 1
UGUAGAAAGAGAUAGAGAGAAGAGCGCUUAAUACUUCUGCUGCGGCACCAAUUGGGUGGCUAUGCCAGCGAAACUGGAGGCCACCGUGUUGAUCUCGACCUGCUUUAUC
.((((...(((((..(((((((...........))))).)).(((((((....)(((((((...((((.....)))).))))))))))))))))))...))))...... ( -36.30)
>consensus
UGUAGAAAGAGAUAGAGAGAAGAGCGCUUAAUACUUCUGCUGCGGCACCAAUUGGGUGGCUAUGCCAGCGAAACUGGAGGCCACCGUGUUGAUCUCGACCUGCUUUAUC
.((((...(((((..(((((((...........))))).)).(((((((....)(((((((...((((.....)))).))))))))))))))))))...))))...... (-36.30 = -36.30 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:30 2006