Locus 7061

Sequence ID X_DroMel_CAF1
Location 17,702,530 – 17,702,626
Length 96
Max. P 0.575847
window11535

overview

Window 5

Location 17,702,530 – 17,702,626
Length 96
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 79.98
Mean single sequence MFE -17.03
Consensus MFE -4.27
Energy contribution -4.27
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.05
Structure conservation index 0.25
SVM decision value 0.08
SVM RNA-class probability 0.575847
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17702530 96 + 22224390
UUCG-------------------AUAAAUACAGUACCCACUCGCUACGAACUACAACACAUAACUGAGAGAGCUUUUGCUUCAAAG----CAGCUCCAAAAA-AAAUCAAAUUCAUAAUC
...(-------------------((.....((((............................)))).(.(((((...(((....))----))))))).....-..)))............ ( -10.19)
>DroSec_CAF1 6764 92 + 1
UGC--------------------AUAAAUACAGUACCCACUCGCUACGAACUACAACACAUAACUGG--GAGCUUUUGCUUUAAAG----CAGCUCCCAA-A-AAAUCAAAUUCAUAAUC
...--------------------.........................................(((--(((((...(((....))----))))))))).-.-................. ( -15.60)
>DroSim_CAF1 7879 92 + 1
UGC--------------------AUAAAUACAGUACCCACUCGCUACGAACUACAACACAUAACUGG--GAGCUUUUGCUUCAAAG----CAGCUCCCAA-A-AAAUCAAAUUCAUAAUU
...--------------------.........................................(((--(((((...(((....))----))))))))).-.-................. ( -15.60)
>DroEre_CAF1 7593 111 + 1
UGCGUUUGCCACCAAGCGCACGCAUAAACACAGUACCCACUCGCUACGAACUACAACAC--AACUCG--GAGCUUUUGCAUCAAAG----CAGCUCGUAA-AAAAAUUAAAUUCAUAAUC
((((((((....)))))))).((...................(((.(((..........--...)))--.)))...(((......)----))))......-................... ( -17.82)
>DroYak_CAF1 7701 116 + 1
UGCGUUUGCCACCAGGCGCCCGCAUAAACACAGUACCCACUCGCUACGAACUACAACACAUAACUCG--GAGCUAUUGCAUCAAAGCAAGCAGCUCGCAA-A-AAAUUAAAUUCAUAAUC
((((..((((....))))..))))..................((..(((...............)))--(((((.((((......))))..)))))))..-.-................. ( -25.96)
>consensus
UGCG___________________AUAAAUACAGUACCCACUCGCUACGAACUACAACACAUAACUGG__GAGCUUUUGCUUCAAAG____CAGCUCCCAA_A_AAAUCAAAUUCAUAAUC
.....................................................................(((((.................)))))........................ ( -4.27 =  -4.27 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:14 2006