Locus 7059

Sequence ID X_DroMel_CAF1
Location 17,684,227 – 17,684,327
Length 100
Max. P 0.549295
window11531

overview

Window 1

Location 17,684,227 – 17,684,327
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 89.37
Mean single sequence MFE -33.02
Consensus MFE -24.36
Energy contribution -25.88
Covariance contribution 1.52
Combinations/Pair 1.14
Mean z-score -1.62
Structure conservation index 0.74
SVM decision value 0.03
SVM RNA-class probability 0.549295
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17684227 100 - 22224390
AGCUGAUUGUCGGUAAACAUCGGCACGGCCUGCAGCGGCAUCUGGCAACGUUGGCCUCGAACGUUUCGUUUUCGAUAAUCAGAAAGCGCUGUCGUAGCUA
.((((..(((((((....)))))))))))((((.(((((....((.((((((.(...).))))))))((((((........))))))))))).))))... ( -33.20)
>DroSec_CAF1 878 100 - 1
AGCUGAUUGUCGGUAAAAAUCGCCACGGCCUGCUGCGACAUCUGGCAAUGUUGGCCUCGAACGUUUUGUUUUCGAUAAUCAGAAAGCGCUGUCGUAGCUA
.((((..((.((((....)))).))))))..(((((((((.(.(((.......)))...........((((((........))))))).))))))))).. ( -30.60)
>DroSim_CAF1 1184 100 - 1
AGCUGAUUGUCGGUAAAAAUCGGCACGGCCUGCUGCGGCAUCUGGCAACGUUGGCCCCGAACGUUUCGUUUUCGAUAAUCAGAAAGCGCUGUCGUAGCUA
.((((..(((((((....)))))))))))..(((((((((....(((((((((....).))))))..((((((........))))))))))))))))).. ( -36.30)
>DroEre_CAF1 880 97 - 1
AGCUGAUUGUCGGUAAACAUCGGCUUGGCCAGAUG---CAUCUGGCAACGUUGGCCUCGAACGUUUCGUUUUCGAUUAUCAGAAAGCGCUGUAGUAGCCA
(((((((.((......)))))))))..((((((..---..)))))).....((((..(..(((...(((((((........))))))).))).)..)))) ( -30.50)
>DroYak_CAF1 915 97 - 1
AGCUGAUGGUCGGUAAACAUCGGCUUGGCCAGAUG---CAUCUGGCAACCUUGGACUCGAACGUUUCGUUUUCGAUUAUAAGAAAGCGCUGUCGUAGUCA
((((((((.........))))))))..((((((..---..)))))).......(((((((......(((((((........)))))))...))).)))). ( -34.50)
>consensus
AGCUGAUUGUCGGUAAACAUCGGCACGGCCUGCUGCG_CAUCUGGCAACGUUGGCCUCGAACGUUUCGUUUUCGAUAAUCAGAAAGCGCUGUCGUAGCUA
.((((..(((((((....)))))))))))..(((((((((....((((((((.(...).))))))..((((((........))))))))))))))))).. (-24.36 = -25.88 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:10 2006