| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,665,248 – 17,665,360 |
| Length | 112 |
| Max. P | 0.512692 |
| Location | 17,665,248 – 17,665,360 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.28 |
| Mean single sequence MFE | -38.42 |
| Consensus MFE | -31.83 |
| Energy contribution | -30.95 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.83 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.512692 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17665248 112 - 22224390 CGUAGUGCAGCCAAUUAUCCGUGGAGAAGGCGAUCGCCAGCAGGGCGGUGGCGAUGAUCGCGCAGAUCGUCGCUAUAGAUAGGGUUACGGCCGAGCAGGGCAUGCU-GGUGUU------- .........(((.....((....))...)))...((((((((..((.((((((((((((.....))))))))))))......(((....))).......)).))))-))))..------- ( -43.40) >DroVir_CAF1 1295 110 - 1 CAUAGUGCAGCCAAUUGUCUGUGGAGAAGGCGAUCGCGAGCAGCGCUGUGGCGAUAAUCGCACAGAUAGUCGCUAUCGAUAGCGUUACGGCCGAGCAGGGCAU-UUUAUUC--------- ...(((((.((..(((((((.......))))))).))..((.(.(((((((((((.(((.....))).)))((((....)))))))))))))..))...))))-)......--------- ( -34.10) >DroGri_CAF1 7533 120 - 1 CAUAGUGCAGCCAAUUGUCUGUGGAGAAGGCGAUCGCGAGCAGCGCUGUCGCGAUUAUCGCACAGAUUGUCGCUAUUGACAGAGUUACGGCCGAGCAGGGCAUAGUUGUUGUUGUUCUUG ...((.((((((((((((((((.((...(((((((((.....)))((((.(((.....)))))))...)))))).)).)))))......(((......))).))))))..))))).)).. ( -38.20) >DroWil_CAF1 1 103 - 1 CAUAGUGAAGCCAAUUGUCUGUGGAGAAGGCAAUUGCCAGUAAGGCUGUGGCUAUAAUUGCACAAAUUGUGGCUAUUGACAAUGUAACGGCCGAACAGGGCAU----------------- .........(((((((((((.......))))))))....((..((((((((((((((((.....))))))))))............))))))..))..)))..----------------- ( -31.90) >DroMoj_CAF1 1539 111 - 1 CAUAGUGCAGCCAAUUGUCUGUGGAGAAGGCGAUCGCGAGCAGCGCUGUGGCGAUAAUCGCACAGAUUGUCGCUAUCGAUAGCGUCACGGCUGAGCAGGGCAUCUUUUUUC--------- ....((.(((((.(((((((.......))))))).....(..(((((((((((((((((.....))))))))))....)))))))..)))))).))...............--------- ( -39.30) >DroAna_CAF1 1 105 - 1 CGUAGUGGAGCCAGUUGUCCGUGGAGAAGGCGAUCGCCAGGAGGGCAGUGGCGAUGAUCGCGCAGAUCGUCGCUAUGGACAGGGUUACGGCCGAGCAGGGCAUCU--------------- ((((.....(((...(((((((((....((((((((((.....)))..(((((.....))).))))))))).))))))))).)))))))(((......)))....--------------- ( -43.60) >consensus CAUAGUGCAGCCAAUUGUCUGUGGAGAAGGCGAUCGCCAGCAGCGCUGUGGCGAUAAUCGCACAGAUUGUCGCUAUCGACAGCGUUACGGCCGAGCAGGGCAU_UU__UU__________ .........(((..(((.((((((......(....(((.....))).((((((((((((.....)))))))))))).)......)))))).)))....)))................... (-31.83 = -30.95 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:04 2006