Locus 7051

Sequence ID X_DroMel_CAF1
Location 17,661,248 – 17,661,350
Length 102
Max. P 0.556275
window11522

overview

Window 2

Location 17,661,248 – 17,661,350
Length 102
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 99.35
Mean single sequence MFE -24.70
Consensus MFE -24.70
Energy contribution -24.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.73
Structure conservation index 1.00
SVM decision value 0.05
SVM RNA-class probability 0.556275
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17661248 102 + 22224390
AUCGCACUUGCCUUUCGCUGCCCCUUUCGUCGGCUGCUUUCCUCCGAUUAGAUUCGCGACACCCACACGGAUCCGAUCCAGAUUCCAAUUGCGAUUCCGAUC
((((((.(((....((((.(((.........))).))........(((..((((((.(.......).))))))..)))..))...))).))))))....... ( -24.80)
>DroSec_CAF1 7718 102 + 1
AUCGCACUUGCCUUUCGCUGCCCCUUUCGUCGGCUGCUUUCCUCCGAUUAGAUUCGCGACACCCACACGGAUCCGAUCCAGAUUCCAAUUGCGAUUCCGAUC
((((((.(((....((((.(((.........))).))........(((..((((((.(.......).))))))..)))..))...))).))))))....... ( -24.80)
>DroEre_CAF1 5393 102 + 1
AUCGCACUUGCCUUUCGCUGCCCCUUUCGUCGGCUGCUUUCCUCCGAUUAGAUUCGCGACACCCACACGGAUCCGAUCCUGAUUCCAAUUGCGAUUCCGAUC
((((((.(((....((((.(((.........))).))........(((..((((((.(.......).))))))..)))..))...))).))))))....... ( -24.60)
>DroYak_CAF1 5188 102 + 1
AUCGCACUUGCCUUUCGCUGCCCCUUUCGUCGGCUGCUUUCCUCCGAUUAGAUUCGCGACACCCACACGGAUCCGAUCCUGAUUCCAAUUGCGAUUCCGAUC
((((((.(((....((((.(((.........))).))........(((..((((((.(.......).))))))..)))..))...))).))))))....... ( -24.60)
>consensus
AUCGCACUUGCCUUUCGCUGCCCCUUUCGUCGGCUGCUUUCCUCCGAUUAGAUUCGCGACACCCACACGGAUCCGAUCCAGAUUCCAAUUGCGAUUCCGAUC
((((((.(((....((((.(((.........))).))........(((..((((((.(.......).))))))..)))..))...))).))))))....... (-24.70 = -24.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:02 2006