Locus 7046

Sequence ID X_DroMel_CAF1
Location 17,639,554 – 17,639,655
Length 101
Max. P 0.546807
window11515

overview

Window 5

Location 17,639,554 – 17,639,655
Length 101
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 92.34
Mean single sequence MFE -21.05
Consensus MFE -16.58
Energy contribution -16.82
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 0.79
SVM decision value 0.03
SVM RNA-class probability 0.546807
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17639554 101 - 22224390
CUUAUGGCACAUGGCAUGACGUAAAUUCUUGCAUGCUCAACACCAUUUAUAUCA-----GAUCCCCUUGAUUAAGCCACUUCAUUACAUG--GUGCUAUAACACAUUG
.(((((((((((((((((.((........))))))).........((((.((((-----(......)))))))))...........))).--)))))))))....... ( -20.80)
>DroSec_CAF1 32547 101 - 1
CUUAUGGCACAUGGCAUGACGUAAAUUCUUGCAUGCUCAACACCAUUUAUAUCA-----GAUCCCCUUGAUUAAGCCACUUCAUUACAUG--GUGCUAUAACACAUUG
.(((((((((((((((((.((........))))))).........((((.((((-----(......)))))))))...........))).--)))))))))....... ( -20.80)
>DroEre_CAF1 35413 108 - 1
CUUAUGGCACAUGGCAUGACGAAAAUUCUUGCAUGCUCAACACCGUUUAUAUCAGAUCAGAUCCCAUUGAUUAAGCCACUUCAUUACAUGAUGUGCUAUACCACAUCG
....((((...(((((((.(((......)))))))).))...............((((((......))))))..))))...........((((((......)))))). ( -24.00)
>DroYak_CAF1 34174 101 - 1
CUUAUGCCACAUGGCAUGACGUGAAUUCUUGCAUGCUCAACAGCAUUUAUAUCG-----GAUCCCCUUGAUUAAGCCACUUCAUUACAUG--GUGCUAUAACACAUUG
.(((((((....))))))).(((.......(((((((....))))).......(-----(....))........))((((.........)--)))......))).... ( -18.60)
>consensus
CUUAUGGCACAUGGCAUGACGUAAAUUCUUGCAUGCUCAACACCAUUUAUAUCA_____GAUCCCCUUGAUUAAGCCACUUCAUUACAUG__GUGCUAUAACACAUUG
..((((((((.(((((((.((........))))))).))....................((((.....))))....................))))))))........ (-16.58 = -16.82 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:56 2006