Locus 7036

Sequence ID X_DroMel_CAF1
Location 17,596,070 – 17,596,189
Length 119
Max. P 0.984882
window11500

overview

Window 0

Location 17,596,070 – 17,596,189
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 99.16
Mean single sequence MFE -38.66
Consensus MFE -37.22
Energy contribution -37.62
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.96
SVM decision value 1.99
SVM RNA-class probability 0.984882
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17596070 119 - 22224390
GGCCCGCAGCCUCUAGCUCAUUUAAAGUUGAUGGUGUGUGAAAAAAUGUGAACAGAUUGUUAUGUAAUUGAGUUUUUAGGCAGCCGUUUUGAGGUCGCCU-UUGUGGUGGCCGCCUCCUU
(((..((.((((..((((((.(((....(((..((.(((............))).))..)))..))).))))))...)))).))........(((((((.-....))))))))))..... ( -40.10)
>DroSec_CAF1 15522 119 - 1
GGCCCGCAGCCUCUAGCUCAUUUAAAGUUGAUGGUGUGUGAAAAAAUGUGAACAGAUUGUUAUGUAAUUGAGUUUUUAGGCAGCCGUUUUGAGGUCGCCU-UUGUGGUGGCCGCCUCCUU
(((..((.((((..((((((.(((....(((..((.(((............))).))..)))..))).))))))...)))).))........(((((((.-....))))))))))..... ( -40.10)
>DroSim_CAF1 34201 119 - 1
GGCCCGCAGCCUCUAGCUCAUUUAAAGUUGAUGGUGUGUGAAAAAAUGUGAACAGAUUGUUAUGUAAUUGAGUUUUUAGGCAGCCGUUUUGAGGUCGCCU-UUGUGGUGGCCGCCUCCUU
(((..((.((((..((((((.(((....(((..((.(((............))).))..)))..))).))))))...)))).))........(((((((.-....))))))))))..... ( -40.10)
>DroEre_CAF1 21898 119 - 1
GCCCCGCAGCCUCUAGCUCAUUUAAAGUUGAUGGUGUGUGAAAAAAUGUGAACAGAUUGUUAUGUAAUUGAGUUUUUAGGCAGCCGUUUUGAGGUCGCCU-UUGUGGUGGCCGCCUCCUU
((...((.((((..((((((.(((....(((..((.(((............))).))..)))..))).))))))...)))).))........(((((((.-....)))))))))...... ( -36.40)
>DroYak_CAF1 27146 120 - 1
GCCCCGCAGCCUCUAGCUCAUUUAAAGUUGAUGGUGUGUGAAAAAAUGUGAACAGAUUGUUAUGUAAUUGAGUUUUUAGGCAGCCGUUUUGAGGUCGCCUUUUGUGGUGGCCGCCUCCUU
((...((.((((..((((((.(((....(((..((.(((............))).))..)))..))).))))))...)))).))........(((((((......)))))))))...... ( -36.60)
>consensus
GGCCCGCAGCCUCUAGCUCAUUUAAAGUUGAUGGUGUGUGAAAAAAUGUGAACAGAUUGUUAUGUAAUUGAGUUUUUAGGCAGCCGUUUUGAGGUCGCCU_UUGUGGUGGCCGCCUCCUU
(((..((.((((..((((((.(((....(((..((.(((............))).))..)))..))).))))))...)))).))........(((((((......))))))))))..... (-37.22 = -37.62 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:43 2006