| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,579,868 – 17,579,981 |
| Length | 113 |
| Max. P | 0.957317 |
| Location | 17,579,868 – 17,579,981 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.38 |
| Mean single sequence MFE | -31.30 |
| Consensus MFE | -26.14 |
| Energy contribution | -25.70 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.957317 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17579868 113 + 22224390 CAGAGUUUUUUUUUAUUUGGAAAACAGGUCUGAUAACCUGAAUUCGAAUCAUCUGGUCCGUGUCACUUGGUUCUAUUCUC-------UGUGUUGAGUGUACUCGCUUAGCAUCUUGCCAC (((((..............(((..(((((......)))))..)))((((((..(((......)))..))))))....)))-------))(((((((((....)))))))))......... ( -29.50) >DroSim_CAF1 19832 112 + 1 CAGAGUUCU-UUUUAUUUGGAAAACAGGUCUGAUAACCUGAAUUCGAAUCAUCUGGUCCGUGUCAUUUGGUUCUAUUCUC-------UGUGUUGAGUGUACUCGCUUAGCAUCUUGCCAC (((((....-.........(((..(((((......)))))..)))((((((..(((......)))..))))))....)))-------))(((((((((....)))))))))......... ( -29.50) >DroYak_CAF1 9665 107 + 1 -------------UACUUAGAAAACAGGUCUGAUAACCUGAAUUCGGAUCAUCUGGUUCGUGUCAUUUGGUUCUAUUUUCUGAGUUCUGUGCUGAGUGUACUCGCUUAGCAUCUUGCCAC -------------.(((((((((((((((......))))).....((((((..(((......)))..))))))..))))))))))...((((((((((....))))))))))........ ( -34.90) >consensus CAGAGUU_U_UUUUAUUUGGAAAACAGGUCUGAUAACCUGAAUUCGAAUCAUCUGGUCCGUGUCAUUUGGUUCUAUUCUC_______UGUGUUGAGUGUACUCGCUUAGCAUCUUGCCAC ...................(((..(((((......)))))..)))((((((..(((......)))..))))))...............((((((((((....))))))))))........ (-26.14 = -25.70 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:15 2006