| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,577,466 – 17,577,578 |
| Length | 112 |
| Max. P | 0.666092 |
| Location | 17,577,466 – 17,577,578 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.93 |
| Mean single sequence MFE | -23.97 |
| Consensus MFE | -20.09 |
| Energy contribution | -19.43 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.666092 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17577466 112 + 22224390 AAGCGGACGCGACGAUGGAAAUGAAAUGAAAAUAGAAAAUAGACAAGUUCGAAAGGAAU--------AUUUAUGAUUUGGAGAGCGUGCGCUAGUCAAAUAUGAAGUUACUUCAUUAUUG .((((.((((....((....))..........((((..(((((....(((....)))..--------.)))))..))))....)))).))))...(((..((((((...))))))..))) ( -22.30) >DroSim_CAF1 17470 112 + 1 AAGCGGACGCGACGAUGGAAAUGAAAUGAAAAUAGAAAAUAGACAAGUCCGAAAGGAAU--------AUUUAUGAUUUGGAGAGCGUGCGCUAGUCAAAUAUGAAGUUACUUCAUUAUUG .((((.((((....((....))..........((((..(((((....(((....)))..--------.)))))..))))....)))).))))...(((..((((((...))))))..))) ( -25.20) >DroYak_CAF1 7108 113 + 1 AAGCGGCAGCGACGAUGGAAAUGAAAUGAAAA-------UAGACAAGUCCAAAAGGAAUAUACAUAUAUUUAUGAUUUGAAGAGCGUGCGCUGCUCAAAUAUGAAGUUGCUUCAUUAUUG ....((((((((((.((((..((..((....)-------)...))..))))...........((((....))))..........))).)))))))(((..((((((...))))))..))) ( -24.40) >consensus AAGCGGACGCGACGAUGGAAAUGAAAUGAAAAUAGAAAAUAGACAAGUCCGAAAGGAAU________AUUUAUGAUUUGGAGAGCGUGCGCUAGUCAAAUAUGAAGUUACUUCAUUAUUG ..((....)).........((((((.(((..................(((....)))...........((((((.(((((..(((....)))..))))))))))).))).)))))).... (-20.09 = -19.43 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:28:09 2006