Locus 6971

Sequence ID X_DroMel_CAF1
Location 17,460,012 – 17,460,111
Length 99
Max. P 0.590796
window11386

overview

Window 6

Location 17,460,012 – 17,460,111
Length 99
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 86.22
Mean single sequence MFE -20.02
Consensus MFE -12.96
Energy contribution -13.64
Covariance contribution 0.68
Combinations/Pair 1.21
Mean z-score -2.07
Structure conservation index 0.65
SVM decision value 0.11
SVM RNA-class probability 0.590796
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17460012 99 + 22224390
GCCGUAAA-AGGUAUCAUGAUUUGGUUACUAUUUCAAUUACUUUAUAAUCACUGUAUGCCAAUGCAGUGAAAAGGCACGAACACAAAAAAGAACAACAAA
(((....(-(((((...(((..(((...)))..)))..))))))....(((((((((....)))))))))...)))........................ ( -23.50)
>DroSec_CAF1 2312 99 + 1
GCCGUAAA-AGGUAUCAUGAUUUGGUUACUAUUUCAAUUACUUUAUAAUCACUGUAUGCCAAUGCGGUGAAAAGGCACGAACACAAAAAUUAACAACAGA
(((....(-(((((...(((..(((...)))..)))..))))))....(((((((((....)))))))))...)))........................ ( -22.80)
>DroSim_CAF1 2430 99 + 1
GCCGUAAA-AGGUAUCAUGAUUUGGUUACUAUUUCAAUUACUUUAUAAUCACUGUAUGCCAAUGCGGUGAAAAGGCACGAACACAAAAAUGUACAACCGA
(((....(-(((((...(((..(((...)))..)))..))))))....(((((((((....)))))))))...)))........................ ( -22.80)
>DroEre_CAF1 10316 97 + 1
GCCGUAAU-AGGUAUCGUGAAUUGGUUACUAUUUCAAUUACUUUAUAUUCACGGUAUGUCAAUGUGGUAAAA--GCACAAACACGAAAAGAAACUACAAU
..(((...-..(((((((((((.(((.............)))....))))))))))).....((((......--.))))...)))............... ( -16.72)
>DroYak_CAF1 2430 100 + 1
GCCGUAAAAAGACAUCCAAAUUUUGUUGCUACUUCAAUUACUUUAUAAUCACUGUAUGCCAAUGCGGUAAAAAGGCACAAGCACAAAACAAAACAACAAA
((((((....((((.........))))..)))..................(((((((....))))))).....)))........................ ( -14.30)
>consensus
GCCGUAAA_AGGUAUCAUGAUUUGGUUACUAUUUCAAUUACUUUAUAAUCACUGUAUGCCAAUGCGGUGAAAAGGCACGAACACAAAAAAAAACAACAAA
(((.......(((((((.....))).))))..................(((((((((....)))))))))...)))........................ (-12.96 = -13.64 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:27:00 2006