Locus 6954

Sequence ID X_DroMel_CAF1
Location 17,417,822 – 17,417,922
Length 100
Max. P 0.723163
window11362

overview

Window 2

Location 17,417,822 – 17,417,922
Length 100
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.56
Mean single sequence MFE -25.16
Consensus MFE -17.52
Energy contribution -18.52
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.98
Structure conservation index 0.70
SVM decision value 0.40
SVM RNA-class probability 0.723163
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17417822 100 - 22224390
GGAUCGUGGCUGUUAAAUAAAUUAAAGCGCGAUUUGCAUAAAUUUGUAAUCGAAUCG---------------AGGUGACAAAGCGUGUAAUUUAUGCCGCACAAUCA-----AUAGCAGA
.....(((((......((((((((..((((((((.(((......)))))))......---------------.(....)...)))).))))))))))))).......-----........ ( -23.20)
>DroSec_CAF1 11420 100 - 1
GGAUCGUGGCUGUUAAAUAAAUUAAAGCGCGAUUUGCAUAAAUUUGUAAUCGAAUCG---------------AGGUGACAAAGCGUGUAAUUUAUGCCGCACAAUCA-----AUAGCAGA
.....(((((......((((((((..((((((((.(((......)))))))......---------------.(....)...)))).))))))))))))).......-----........ ( -23.20)
>DroEre_CAF1 11373 100 - 1
GGAUCGUGGCUGUUAAAUAAAUUAAGUCGCGAUUUGCAUAAAUUUGUAAUCGAAUCG---------------AGGUGACAAAGCGUGUAAUUUAUGCCGAAAAAUCG-----AUAACAGA
(((((((((((.............))))))))))).......(((((.(((((.(((---------------.(....)...(((((.....))))))))....)))-----)).))))) ( -27.42)
>DroYak_CAF1 11373 100 - 1
GGAUCGUGGCUGUUAAAUAAAUUAAAGCGCGAUUUGCAUAAAUUUGUAAUCGAAUCG---------------AGGUGACAAAGCGUGUAAUUUAUGCCGCAAAAUCA-----AUAACAGA
.....(((((......((((((((..((((((((.(((......)))))))......---------------.(....)...)))).))))))))))))).......-----........ ( -23.20)
>DroAna_CAF1 11330 120 - 1
CGAUCCAAUCGGUUAAAUAAAUUAAAGCGCGAUUUGCAUAAAUUUGUAAUCGAAUCGAAUCGGAUCGAGUUGAGGUGACAAAGCGUGUAAUUUAUGCCACAUUUCCACUCUCAUAUCUGA
.(((((..((((((..(((((((...(((.....)))...))))))).....))))))...)))))((((.((((((.....(((((.....)))))..)))))).)))).......... ( -28.80)
>consensus
GGAUCGUGGCUGUUAAAUAAAUUAAAGCGCGAUUUGCAUAAAUUUGUAAUCGAAUCG_______________AGGUGACAAAGCGUGUAAUUUAUGCCGCAAAAUCA_____AUAACAGA
.....(((((......((((((((...(((((((.(((......)))))))......................(....)...)))..))))))))))))).................... (-17.52 = -18.52 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:38 2006