Locus 6939

Sequence ID X_DroMel_CAF1
Location 17,377,211 – 17,377,302
Length 91
Max. P 0.533987
window11341

overview

Window 1

Location 17,377,211 – 17,377,302
Length 91
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.31
Mean single sequence MFE -25.31
Consensus MFE -19.06
Energy contribution -18.70
Covariance contribution -0.36
Combinations/Pair 1.10
Mean z-score -1.50
Structure conservation index 0.75
SVM decision value 0.00
SVM RNA-class probability 0.533987
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17377211 91 - 22224390
----------------------------GCCAAGUUGCGGAAGCGAACAUUUAAUUGACUUGGCGUGUUAAGCGCUGCAUACCAGCACAUAACAGCAAUCAACCGACAAACAACUGG-UG
----------------------------((((((((((....)))).((......)).)))))).(((((.(.((((.....)))).).))))).......((((.........)))-). ( -26.10)
>DroPse_CAF1 113907 87 - 1
--------------------------------AGUUGCGGAAGCGAACAUUUAAUUGACUUGGCGUGUUAAGCGUUGCAUACCAGCACAUAACAGCAAUCAACCGACAAACAACUUG-UG
--------------------------------.(((((....)).)))......((((....((.(((((.(.((((.....)))).).)))))))..))))...((((.....)))-). ( -17.90)
>DroGri_CAF1 108674 89 - 1
------------------------------CAAGUUGCGGAAGC-AACAUUUAAUUGACUUGGCGUGUUAAGCGCUGCAUACCAGCACAUAACAGCAAUCAACCGACAAACAACUUCUUG
------------------------------...(((((....))-)))......((((....((.(((((.(.((((.....)))).).)))))))..)))).................. ( -23.40)
>DroEre_CAF1 94609 99 - 1
--------------GCCAAGU------CGCCAAGUUGCGGAAGCGAACAUUUAAUUGACUUGGCGUGUUAAGCGCUGCAUACCAGCACAUAACAGCAAUCAACCGACAAACAACUGG-UG
--------------(((((((------((.....((((....)))).........))))))))).(((((.(.((((.....)))).).))))).......((((.........)))-). ( -30.54)
>DroAna_CAF1 98194 119 - 1
GUGGAGAGUGGAGAGCCAAGAGUGGAGAGCCGCGUUGCGGAAGCAAACAUUUAAUUGACUUGGCGUGUUAAGCGCUGCAUACCGGCACAUAACAGCAAUCAACCGCCAAACAACUCG-UG
((...(.((((...((((((.((((....)))).((((....))))............)))))).(((((.(.((((.....)))).).)))))........)))))..))......-.. ( -36.00)
>DroPer_CAF1 111172 87 - 1
--------------------------------AGUUGCGGAAGCGAACAUUUAAUUGACUUGGCGUGUUAAGCGUUGCAUACCAGCACAUAACAGCAAUCAACCGACAAACAACUUG-UG
--------------------------------.(((((....)).)))......((((....((.(((((.(.((((.....)))).).)))))))..))))...((((.....)))-). ( -17.90)
>consensus
______________________________CAAGUUGCGGAAGCGAACAUUUAAUUGACUUGGCGUGUUAAGCGCUGCAUACCAGCACAUAACAGCAAUCAACCGACAAACAACUUG_UG
.................................(((((....)).)))......((((....((.(((((.(.((((.....)))).).)))))))..)))).................. (-19.06 = -18.70 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:19 2006