Locus 6931

Sequence ID X_DroMel_CAF1
Location 17,341,127 – 17,341,232
Length 105
Max. P 0.783460
window11332

overview

Window 2

Location 17,341,127 – 17,341,232
Length 105
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.55
Mean single sequence MFE -22.12
Consensus MFE -3.46
Energy contribution -4.10
Covariance contribution 0.64
Combinations/Pair 1.20
Mean z-score -1.71
Structure conservation index 0.16
SVM decision value 0.56
SVM RNA-class probability 0.783460
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17341127 105 - 22224390
ACAGUUACAAAAACAUAUUAUCCACAAUUAUU---AGUA-----------ACAAUACUGGUAGUAGAAUAUUUCCUUGCAAGAGC-ACAGCCUUAGCUAUUUUCAAGCUGCUGUCGCAGA
..........................((((((---((((-----------....))))))))))...................((-(((((...((((.......))))))))).))... ( -18.90)
>DroSec_CAF1 58374 116 - 1
ACAGUUAUAAAAAUAUAUUAUCCACAACUAUU---GGUAAAUGUGCUCAAACAAUACUGGUUGUAGGUUAUUUACUUGCAAGAGC-CCAGCUUUAGCUAUUUUCAAGCUGCUCUCCCAGA
.............((((((..(((.......)---))..))))))...........((((((((((((.....))))))))(((.-.((((((...........))))))..))))))). ( -24.40)
>DroSim_CAF1 48184 116 - 1
ACAGUUAUAAAAACAUAUUAUCCACAACUAUU---GGUAAAUGUGCUCAAACAAUACUGGUUGUAGGUUAUUUACUUGCAAGAGC-CCAGCUUUAGCUAUUUUCAAGCUGCUCUCCCAGA
.............((((((..(((.......)---))..))))))...........((((((((((((.....))))))))(((.-.((((((...........))))))..))))))). ( -26.10)
>DroEre_CAF1 59009 115 - 1
UCGUAUAUAAAACCAUAUUAACCACAAUUAUU---GGUAGCUGUCUUCAGACUAU-CUUUAUAUCUGUUAUUUUCCUGCUGGACCCCUAGCUCUAGCUACUUUCAAGCUGCCC-CCCAGA
................................---((((((((((....)))...-.....................((((((........))))))........))))))).-...... ( -19.80)
>DroYak_CAF1 49744 117 - 1
ACAUAUAUAAAAACAUAUUAACCACAAUUAUUGUUGGGAGCUGUGUUCAGAAUAU-CUUCUUAUCUUUUAUUUCCCUGCUUG--CCGUAGCUCUAGCUACUUUCAAGCUGCCCUUCCAGA
.................................((((((((((....))).....-.....................(((((--..(((((....)))))...)))))....))))))). ( -21.40)
>consensus
ACAGUUAUAAAAACAUAUUAUCCACAAUUAUU___GGUAAAUGUGCUCAAACAAUACUGGUUGUAGGUUAUUUACUUGCAAGAGC_CCAGCUUUAGCUAUUUUCAAGCUGCUCUCCCAGA
.............................................................................((.(((((....))))).))..........(((......))). ( -3.46 =  -4.10 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:11 2006