Locus 6926

Sequence ID X_DroMel_CAF1
Location 17,336,523 – 17,336,637
Length 114
Max. P 0.691073
window11325

overview

Window 5

Location 17,336,523 – 17,336,637
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.24
Mean single sequence MFE -36.86
Consensus MFE -29.60
Energy contribution -30.80
Covariance contribution 1.20
Combinations/Pair 1.06
Mean z-score -1.52
Structure conservation index 0.80
SVM decision value 0.33
SVM RNA-class probability 0.691073
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17336523 114 - 22224390
AGGGGGCUAGUUGCUGUAGGCUUAUCUGGCACGCGCGACUGCCCCAACAAGUGCAGUUCAAGUGGCAAAACGGUCAAAGUUUUCCUACUCACACUCACACUCG------CAGUUCGCCUU
..(((((.((((((.((..(((.....)))..))))))))))))).....(((.(((...(((((.(((((.......))))).)))))...))))))....(------(.....))... ( -38.10)
>DroSec_CAF1 53726 107 - 1
AGGGGGCUAGUUGCUGUAGGCUUAUCUGGCACGCGCGACUGCCCCAACAAGUGCAGUUCAAGUGGCAAAACGGUCAAAGUUUUCCUACUCA------CACUCG------CAG-UCGCCUU
..(((((.((((((.((..(((.....)))..))))))))))))).....(((.(((...(((((.(((((.......))))).)))))..------.)))))------)..-....... ( -37.30)
>DroSim_CAF1 43574 113 - 1
AGGGGGCUAGUUGCUGUAGGCUUAUCUGGCACGCGCGACUGCCCCAACAAGUGCAGUUCAAGUGGCAAAACGGUCAAAGUUUUCCUACUCACACUCACACUCG------CAG-UCGCCUU
..(((((.((((((.((..(((.....)))..))))))))))))).....(((.(((...(((((.(((((.......))))).)))))...))))))....(------(..-..))... ( -38.10)
>DroEre_CAF1 54208 107 - 1
AGGGUGCCAGUUUCUGUAGGCUUAUCUGGCACGCGCGACUGCCCCAACAAGUGCAGUUCAAGUGGCAAAACGGUCAAAGUUUUCCUAUUUACACUCGC------------AC-UCGCCUU
.(.(((((((.....(....)....))))))).)((((.((......)).(((((((..((((((.(((((.......))))).))))))..))).))------------))-))))... ( -31.90)
>DroYak_CAF1 44989 119 - 1
AGGGGGCUAGUUUCUGUAGGCUUAUCUGGCACGCGCGACUGCCCCAACAAGUGCAGUUCAAGUGGCAAAACGGUCAAAGUUUUCCUAUUCACACUCGCACUUGGACUUGCAC-UCGCCUU
..(((((.((((..(((..(((.....)))..))).)))))))))....((((((((((((((((.(((((.......))))))).............)))))))).)))))-)...... ( -38.91)
>consensus
AGGGGGCUAGUUGCUGUAGGCUUAUCUGGCACGCGCGACUGCCCCAACAAGUGCAGUUCAAGUGGCAAAACGGUCAAAGUUUUCCUACUCACACUCACACUCG______CAG_UCGCCUU
..(((((.((((((.((..(((.....)))..))))))))))))).....(((.(((...(((((.(((((.......))))).)))))...))))))...................... (-29.60 = -30.80 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:05 2006