Locus 6925

Sequence ID X_DroMel_CAF1
Location 17,336,291 – 17,336,388
Length 97
Max. P 0.997830
window11324

overview

Window 4

Location 17,336,291 – 17,336,388
Length 97
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 78.52
Mean single sequence MFE -10.63
Consensus MFE -10.19
Energy contribution -10.63
Covariance contribution 0.45
Combinations/Pair 1.07
Mean z-score -1.67
Structure conservation index 0.96
SVM decision value 2.94
SVM RNA-class probability 0.997830
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17336291 97 + 22224390
AAGUACUUAACAAGUUCAAUGUGCAUUUCAACUAUUUCGAGUGCAACUUAACUAGUCAAACCCCAUUUUUUCAUUUUCCACCUCUUUACAGCCCUUU
.........((.((((.....(((((((.((....)).)))))))....)))).))......................................... (  -7.70)
>DroSec_CAF1 53516 76 + 1
AAGUAUUUCACAAGUUCAAUGUGCAUUUCAACUAUUGGAAGUGCAACUUAACUAAUCAA---------------------UCUCCUUACAGCCCUUU
............((((.....((((((((........))))))))....))))......---------------------................. ( -11.20)
>DroSim_CAF1 43372 76 + 1
AAGUAUUUCACAAGUUCAAUGUGCAUUUCAACUAUUUGAAGUGCAACUUAACUAAUCAA---------------------UCUCCUUACAGCCCUUU
............((((.....((((((((((....))))))))))....))))......---------------------................. ( -13.00)
>consensus
AAGUAUUUCACAAGUUCAAUGUGCAUUUCAACUAUUUGAAGUGCAACUUAACUAAUCAA_____________________UCUCCUUACAGCCCUUU
............((((.....((((((((((....))))))))))....))))............................................ (-10.19 = -10.63 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:03 2006