Locus 6912

Sequence ID X_DroMel_CAF1
Location 17,298,039 – 17,298,133
Length 94
Max. P 0.983732
window11306

overview

Window 6

Location 17,298,039 – 17,298,133
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 73.19
Mean single sequence MFE -43.94
Consensus MFE -21.40
Energy contribution -21.65
Covariance contribution 0.25
Combinations/Pair 1.25
Mean z-score -2.37
Structure conservation index 0.49
SVM decision value 1.95
SVM RNA-class probability 0.983732
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17298039 94 - 22224390
GGAGGAGGAGCAGGUGUUGGUAGUUCCCAGAGAGAGGAGGCCACCACACCGGGUGAAUCGCCCGGAGGACGCCUGUCCCGCUGGUUUUCCAUCA
((((((((..(((((((((((.((..((.......))..)).)))...(((((((...)))))))..))))))))..)).....)))))).... ( -42.10)
>DroVir_CAF1 12099 82 - 1
UCAGGGGCAUC------------GUCUCAGCGCGAGGAGAACACUGCACCCGGUGAAUCGCCGGGCGGACGUCUUUCGCGUUGGUUCUCCAUUC
...((((....------------..(.(((((((((.(((...((((..((((((...))))))))))...)))))))))))))..)))).... ( -32.80)
>DroGri_CAF1 9271 85 - 1
UCGGGGGGGGCAU-C--------GGGGCAGCGCGAGGAUAUUACAACGCCGGGUGAAUCGCCGGGCGGACGUUUGUCGCGCUGGUUCUCGAUAC
...........((-(--------((((((((((((.((........((((.((((...)))).)))).....)).))))))))..))))))).. ( -36.92)
>DroSec_CAF1 15281 94 - 1
GGGGGAGGAGCAGGUGGUGGUGGUUCCCAGAGAGAGGAGGCCACCACACCGGGUGAAUCGCCCGGAGGACGUCUGUCCCGCUGGUUCUCCAUCA
(..((((((.(((.((((((((((..((.......))..)))))))).(((((((...))))))).((((....))))))))).))))))..). ( -50.60)
>DroSim_CAF1 6498 94 - 1
GGUGGAGGAGCAGGUGGUGGUGGUUCCCAGAGAGAGGAGGCCACCACACCGGGUGAAUCGCCCGGAGGACGUCUGUCCCGCUGGUUCUCCAUCA
(((((((((.(((.((((((((((..((.......))..)))))))).(((((((...))))))).((((....))))))))).))))))))). ( -55.00)
>DroMoj_CAF1 22892 91 - 1
UCGGGGGCGGCAGGCG---GGGUGUCCCAGCGCGAGGAUAAUACGGCGCCCGGCGAAUCGCCGGGCGGACGGCUGUCGCGCUGGUUCUCCAUAC
..(((((.((((....---...))))(((((((((.(......((.(((((((((...)))))))))..))..).))))))))).))))).... ( -46.20)
>consensus
GCGGGAGGAGCAGGUG___GUGGGUCCCAGAGAGAGGAGACCACCACACCGGGUGAAUCGCCCGGAGGACGUCUGUCCCGCUGGUUCUCCAUCA
...((((((.(((.................................(.(((((((...))))))).)(((....)))...))).)))))).... (-21.40 = -21.65 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:48 2006