Locus 6900

Sequence ID X_DroMel_CAF1
Location 17,271,274 – 17,271,381
Length 107
Max. P 0.519422
window11287

overview

Window 7

Location 17,271,274 – 17,271,381
Length 107
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 83.47
Mean single sequence MFE -22.87
Consensus MFE -15.57
Energy contribution -16.97
Covariance contribution 1.40
Combinations/Pair 1.12
Mean z-score -1.62
Structure conservation index 0.68
SVM decision value -0.03
SVM RNA-class probability 0.519422
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17271274 107 - 22224390
AAAAUUCAAGGGGCACUUAGUUAAGGAGUGACC---CAAAGAAAUGGCAUUGCGUAAAACAAGCAUUUCAUUACUAAUUUCAAACUUGUUAGCUA--CUCGCAGGAAAAAAU
......((((((((((((.......))))).))---)...((((((.(.(((.......))))))))))...............))))...((..--...)).......... ( -19.80)
>DroSec_CAF1 116435 107 - 1
AAAAUUCAAAGGGCACUUAGUUAAGGAGUGACC---CAAAGAAAUGGCAUUGCGUAAAACAAGCAUUUCUUUUCUAAUUUCAAACUUGUUAGCUA--CUUGCAGAAAAAAAU
............(((..(((((((.((((....---...(((((.((...(((.........)))..)).)))))........)))).)))))))--..))).......... ( -20.96)
>DroSim_CAF1 120171 107 - 1
AAAAUUCAAGGGGCACUUAGUUAAGGAGUGACC---CAAAGAAAUGGCAUUGCGUAAAACAAGCAUUUCUUUUCUAAUUUCAAACUUGUUAGCUA--CUUGCAGUAAAAAAU
......((((((((((((.......))))).))---)(((((((((.(.(((.......)))))))))))))............))))...((..--...)).......... ( -22.30)
>DroEre_CAF1 121044 108 - 1
AAAAUUCGAG-GGCACUCAGUUAGGGAGUGUUCCCACAAAAAAUUGGCAUUGCUUAAAACAAGCAUUUCAUUUCUAAUUUGAAACUUGUUUGCUG--CUUGC-GGGAAAACC
.........(-(((((((.......))))))((((.(((....)))(((..((...(((((((..(((((.........))))))))))))...)--).)))-))))...)) ( -28.40)
>DroYak_CAF1 126321 95 - 1
--------------ACUCAGUUGAGGAGUGACC---CAAAGAAAUGGCAUUGCUUAAAACAAGCAUUUCAUUUCUAAUUUCAAACUUGUUUGCUGUACUGGCAGGGAAAAAC
--------------.(((....)))......((---(..((((((((...(((((.....)))))..))))))))...............((((.....)))))))...... ( -22.90)
>consensus
AAAAUUCAAGGGGCACUUAGUUAAGGAGUGACC___CAAAGAAAUGGCAUUGCGUAAAACAAGCAUUUCAUUUCUAAUUUCAAACUUGUUAGCUA__CUUGCAGGAAAAAAU
............(((..(((((((.((((..........((((((((...(((.........)))..))))))))........)))).)))))))....))).......... (-15.57 = -16.97 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:31 2006