Locus 6897

Sequence ID X_DroMel_CAF1
Location 17,255,146 – 17,255,266
Length 120
Max. P 0.614126
window11282

overview

Window 2

Location 17,255,146 – 17,255,266
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 80.31
Mean single sequence MFE -31.75
Consensus MFE -16.69
Energy contribution -18.75
Covariance contribution 2.06
Combinations/Pair 1.10
Mean z-score -2.27
Structure conservation index 0.53
SVM decision value 0.16
SVM RNA-class probability 0.614126
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17255146 120 + 22224390
UUCCUCAUCGGAUGUUGCAGAUUCUUCGCCGGAUUCGCCGGAAUCCUCAAUAUCUGAUGACUUUUUGGACUCCUUAACGGCUGAACUCGGUUUUACCCUCGGAGAUCCCCCUCCUGAGUU
....(((((((((((((..((((((..((.......)).))))))..))))))))))))).......(((((......(((((....)))))........((((......)))).))))) ( -36.40)
>DroSec_CAF1 100645 111 + 1
UUCCUUAUCGGAUGUUGCAGAUUCUUCGCCGGAUU---------CCUCAAUAUCUGAUGACUUUUGGGACUGUUUACCGACUGAACUCGGUUUUCCCCUCGGAAAUCCCCCUCCUGAGCU
....(((((((((((((..((.(((.....))).)---------)..))))))))))))).....((((......(((((......)))))..))))((((((........))).))).. ( -31.70)
>DroSim_CAF1 104119 111 + 1
UUCCUUAUCGGAUGUUGCAGAUUCUUCGCCGGAUU---------CCUCAAUAUCUGAUGACUUUUGGGACUGUUUACCGACAGAACUCGGUUUUCCCCUCGGAAAUCCCCCUCCUGAGCU
....(((((((((((((..((.(((.....))).)---------)..)))))))))))))..((..((((((((....))))).....((.(((((....))))).))...)))..)).. ( -32.90)
>DroEre_CAF1 106726 120 + 1
UUCGUCAUCGGAUGCAGCGGAUUCUUCGCCGGAUUCAGCUGACUCCUCACGAUCUGAUGAUUUUUGCGGCCUUCUCCCAUUUAAACUGACUUUUCCCCUCGAAGAUCCCUCUCCUGACUU
...((((..(((.(.((.((((.(((((..(((.((((............((((....))))..((.((......))))......))))....)))...))))))))))))))))))).. ( -26.00)
>consensus
UUCCUCAUCGGAUGUUGCAGAUUCUUCGCCGGAUU_________CCUCAAUAUCUGAUGACUUUUGGGACUGUUUACCGACUGAACUCGGUUUUCCCCUCGGAAAUCCCCCUCCUGAGCU
.((((((((((((((((..((....))...(((.((....)).))).)))))))))))))......)))............................(((((((......)))).))).. (-16.69 = -18.75 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:26 2006