Locus 6889

Sequence ID X_DroMel_CAF1
Location 17,229,692 – 17,229,794
Length 102
Max. P 0.528702
window11267

overview

Window 7

Location 17,229,692 – 17,229,794
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 90.88
Mean single sequence MFE -28.32
Consensus MFE -24.74
Energy contribution -25.70
Covariance contribution 0.96
Combinations/Pair 1.04
Mean z-score -1.21
Structure conservation index 0.87
SVM decision value -0.01
SVM RNA-class probability 0.528702
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17229692 102 - 22224390
AUUACUGGACAGUUGCCAGCGAACUUGGACAGUUGGCAGCGUUUUUCCGGCCUCUUCUACGAACUGGCUAACAGUUGUCCAUGUGCAGCCUUCUAUCGCUCG
..((((((((((((((((((...........)))))))))........((((..(((...)))..))))......)))))).))).(((........))).. ( -31.00)
>DroSec_CAF1 75246 102 - 1
AUUACUGGCCAGUUGCCAACGAACUUGGACAGUUGGCAGCGUUUUUCCGGUCUCUUCUACGAACUGGCAAACAGUUGUCCAUGUGCAACCUUCUAUCUCUCG
..((((((.(((((((((((...........)))))))))((((..(((((.((......))))))).))))...)).))).)))................. ( -26.80)
>DroSim_CAF1 77905 102 - 1
AUUACUGGCCAGUUGCCAACGAACUUGGACAGUUGGCAGCGUUUUUCCGGUCUCUUCUACGAACUGGCUAACAGUUGUCCAUGUGCAACCUUCUAUCUCUCG
..((((((.(((((((((((...........)))))))))(((...(((((.((......)))))))..)))...)).))).)))................. ( -26.60)
>DroEre_CAF1 81410 102 - 1
AUUACUGGACAGUUGCCAGCGAACUUGGACAGUUGGCAGCGUUUUUCCGGUCUCUUCUGCGAACUGGCUAACAGUUGUCCAUGUGCAACCUUCUAUCUCUCA
..((((((((((((((((((...........)))))))))(((...(((((.((......)))))))..)))...)))))).)))................. ( -31.60)
>DroYak_CAF1 83967 89 - 1
AUUACUGGACAGUUGCCAGCGAACUUGGACAGUUGGCAGCGUUUUUCCGGUCUCCUCUGCGAACUGGCUAACAGUUGU-------------UCUAUCUCUCG
......((((((((((((((...........)))))))))(((...(((((.((......)))))))..)))...)))-------------))......... ( -25.60)
>consensus
AUUACUGGACAGUUGCCAGCGAACUUGGACAGUUGGCAGCGUUUUUCCGGUCUCUUCUACGAACUGGCUAACAGUUGUCCAUGUGCAACCUUCUAUCUCUCG
.....(((((((((((((((...........)))))))))(((...(((((.((......)))))))..)))...))))))..................... (-24.74 = -25.70 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:13 2006