| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,158,991 – 17,159,091 |
| Length | 100 |
| Max. P | 0.564770 |
| Location | 17,158,991 – 17,159,091 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 81.18 |
| Mean single sequence MFE | -29.60 |
| Consensus MFE | -17.81 |
| Energy contribution | -18.87 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.564770 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17158991 100 + 22224390 GCCUUGGUUAAUGUUUUAAUUUAUGGGGUUGUGGCUAAGCGAAUUCAAUUUGCGCUGCCUUCGAGUGGCA-----CACACACACAACCCCU-GGCCAAGUAUCCCU ..(((((((((((........)))(((((((((.....((((((...))))))((..(......)..)).-----......))))))))))-)))))))....... ( -34.20) >DroPse_CAF1 16386 92 + 1 GCCAAUGUUAAUGUUCUAAUUUAUGGGGUUGCGGCUAAGCGAAUUCAAUUUGCGUUGCCUUCGAGUGGCGGGCCGCAGCCGCACAACCCCU-A------------- ........................((((((((((((..((((((...))))))((.((((.(.....).)))).)))))))))..))))).-.------------- ( -33.00) >DroSim_CAF1 10250 98 + 1 GCCUUGGUUAAUGUUUUAAUUUAUGGGGUUGUGGCUAAGCGAAUUCAAUUUGCGCUGCCUUCGAGUGGCA-----CAC--ACACAACCCCU-GGCCAAGUAUCCCU ..(((((((((((........)))(((((((((.....((((((...))))))((..(......)..)).-----...--.))))))))))-)))))))....... ( -34.20) >DroEre_CAF1 10186 98 + 1 GCCUUGGUUAAUGUUUUAAUUUAUGGGGUUGCGGCUAAGCGAAUUCAAUUUGCGCUGCCUUCGAGUGGCA-----CAC--ACACAACCCCU-UGCCAAGUAUCCGA ..(((((((((....)))......(((((((.(((...((((((...))))))...))).....(((...-----..)--)).))))))).-.))))))....... ( -30.70) >DroYak_CAF1 10328 87 + 1 GCCUUGCUUAAUGUUUUAAUUUAUGGGGUUGCGGCUAAGCGAAUUCAAUUUGCGCUGCCUUCGAGUGGCA-----CAC--ACACA------------AGUAGCACC (((..(((..(((........)))..)))...)))...((((((...))))))(((((.((.(.(((...-----..)--)).))------------))))))... ( -20.10) >DroAna_CAF1 16053 95 + 1 GUCUUGGUUAAUGUUUUAAUUUAUGGGGUUGCGGCUAAGCGAAUUCAAUUUGCGUUGCCUUCGAGUGCCG-----CACACACACACCCCUUUUGCGGAGU------ ..(((.(((((....)))......(((((((((((....((((..((((....))))..))))...))))-----)).......)))))....)).))).------ ( -25.41) >consensus GCCUUGGUUAAUGUUUUAAUUUAUGGGGUUGCGGCUAAGCGAAUUCAAUUUGCGCUGCCUUCGAGUGGCA_____CAC__ACACAACCCCU_GGCCAAGUAUCCC_ ........................(((((((.(((...((((((...))))))...))).....(((........))).....)))))))................ (-17.81 = -18.87 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:52 2006