Locus 687

Sequence ID X_DroMel_CAF1
Location 1,907,582 – 1,907,682
Length 100
Max. P 0.874394
window1100

overview

Window 0

Location 1,907,582 – 1,907,682
Length 100
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.53
Mean single sequence MFE -32.86
Consensus MFE -30.10
Energy contribution -29.42
Covariance contribution -0.68
Combinations/Pair 1.17
Mean z-score -1.70
Structure conservation index 0.92
SVM decision value 0.89
SVM RNA-class probability 0.874394
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1907582 100 - 22224390
CAGAGUGCGGGUCGUCUGUUGGGUCGAAUUGAGUAUUGUUUGCCUUUUGAAAAGAAAAACAGGCGGUUCUAGGGAAAACUCUUUGGCAACGGCACGAAUA--------------------
....((((....((((((((.((.(((((........)))))))((((....)))).))))))))((((((((((....))))))).))).)))).....-------------------- ( -29.50)
>DroSec_CAF1 3052 100 - 1
CAGAGUGCGGGUCGUCUGUUGGGGCGAAUUGAGUAUCGUUUGCCUUUUGAAAAGAAAAACAGGCGGUUCUGGGGAAAACUCUUUGGCAACAGCACGAAUA--------------------
....(((((..(((((((((.((((((((........))))))))(((....)))..)))))))))..).(((.....)))..((....)))))).....-------------------- ( -33.70)
>DroSim_CAF1 3298 100 - 1
CAGAGUGCGGGUCGUCUGUUGGGGCGAAUUGAGUAUCGUUUGCCUUUUGAAAAGAAAAACAGGCGGUUCUGGGGAAAACUCUUUGGCAACGGCACGAAUA--------------------
....(((((..(((((((((.((((((((........))))))))(((....)))..)))))))))..).(((.....)))..((....)))))).....-------------------- ( -32.80)
>DroEre_CAF1 869 108 - 1
CAAAGUGCGGGUCGUCUGUUGGGGCGAAUUGAGUAUCGUUUGCCUUUUGAAAAGGAAAACAGGCGGUUC-GGGGAAAACUCUUUGGCAGCGGCACGAAUACGAGUACGA-----------
....(((((..(((((((((..(((((((........)))))))((((....)))).)))))))))..)-(((.....)))((((((....)).)))).....))))..----------- ( -32.60)
>DroYak_CAF1 3517 119 - 1
CAAAGUGCGGGUCGUCUGUUGUGGCGAAUUGAGUAUCGUUUGCCUCUUGAAAGGGAAAACAGGCGGUUC-GGGGAAAACUCUUUGGCAGCGGUACUAAUACGAAUUCGAAUACGUAUAUG
...((((((..(((((((((..(((((((........)))))))((((....)))).)))))))))..)-(((.....)))..........))))).(((((.((....)).)))))... ( -35.70)
>consensus
CAGAGUGCGGGUCGUCUGUUGGGGCGAAUUGAGUAUCGUUUGCCUUUUGAAAAGAAAAACAGGCGGUUCUGGGGAAAACUCUUUGGCAACGGCACGAAUA____________________
....(((((..(((((((((..(((((((........)))))))((((....)))).)))))))))..).((((....)))).........))))......................... (-30.10 = -29.42 +  -0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:07 2006