| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,135,727 – 17,135,847 |
| Length | 120 |
| Max. P | 0.883188 |
| Location | 17,135,727 – 17,135,847 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.67 |
| Mean single sequence MFE | -28.60 |
| Consensus MFE | -27.93 |
| Energy contribution | -28.27 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.883188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17135727 120 - 22224390 GUUAAACAUCUAACAAAAGCGCUUCGCACGCACAGCAAACCGGUCGAUUCCGAAUUCAGACGUGCUAAAUAACGUUUGAAAACAAAAUUUGCUCGGUUGACGUUGUAAAUAACAACACGG ((((......))))....(((.......)))........((((((((..((((.(((((((((........)))))))))..((.....)).)))))))))(((((.....))))).))) ( -29.60) >DroSim_CAF1 642 120 - 1 GUUAAACAUCUAACAAAAGCGCUUCGCACGCACAGCAAACCGGUCGAUUCCGAAUUCAGACGUGCUAAAUAACGUUUGAAAACAAAAUUUGCUCGGUUGAAGUUGUAAAUAACAACACGG ((((..............(((.......)))(((((.(((((((.((((.....(((((((((........))))))))).....)))).)).)))))...)))))...))))....... ( -29.00) >DroYak_CAF1 572 120 - 1 GUUAAACAUAUAACAAAAGCGCUUCGCACGCACAGCAAACCGGUCGAUUCCGAAUUCAGACGUGCUUAAUAACGUUUGUAAGCAAAAUUUGCUCGGUUGAAGUUGUAAAUAACAACACGA ((((..............(((.......)))(((((.(((((((.((((..(....(((((((........)))))))....)..)))).)).)))))...)))))...))))....... ( -27.20) >consensus GUUAAACAUCUAACAAAAGCGCUUCGCACGCACAGCAAACCGGUCGAUUCCGAAUUCAGACGUGCUAAAUAACGUUUGAAAACAAAAUUUGCUCGGUUGAAGUUGUAAAUAACAACACGG ((((..............(((.......)))(((((.(((((((.((((..(..(((((((((........)))))))))..)..)))).)).)))))...)))))...))))....... (-27.93 = -28.27 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:45 2006