Locus 684

Sequence ID X_DroMel_CAF1
Location 1,905,759 – 1,905,878
Length 119
Max. P 0.949337
window1097

overview

Window 7

Location 1,905,759 – 1,905,878
Length 119
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.66
Mean single sequence MFE -38.67
Consensus MFE -35.95
Energy contribution -36.73
Covariance contribution 0.78
Combinations/Pair 1.02
Mean z-score -2.62
Structure conservation index 0.93
SVM decision value 1.39
SVM RNA-class probability 0.949337
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1905759 119 + 22224390
UUCGCUCAGGUUGAGCGAGGUGAAAGAGUGAGUGAGUAAUGCUGUUAGCAAUGUAAACAGUUUACGGCAUUCGGCAUUUGCUGG-GGUUAUUCAUGAAUCGCUGUGUUUUUUAUUGUUGC
.((((((.....))))))(((((((((((((((((((((((((((.(((..((....))))).))))).((((((....)))))-))))))))))...)))))....))))))))..... ( -36.50)
>DroSec_CAF1 1249 119 + 1
UUCGCGCAGGUUGAGCGAGGUGAAAGAGUGAGUGAGUAAUGCUGUGAGCAAUGUAAACAGUUUACGGCAUUCGGCAUUUGCUGG-GGUUAUUCAUGAAUCGCUGUGUUUUUUAUCGUUGC
.((((.(.....).))))(((((((((((((((((((((((((((((((..((....))))))))))).((((((....)))))-))))))))))...)))))....))))))))..... ( -38.60)
>DroYak_CAF1 1555 120 + 1
UUCGCUCAGGUUGAGCGAGGUGAAAGAGUGAGUGAGUAAUGCUGUGAGCAAUGUAAACAGUUUACGGCAUUCGGCAUUCGCAGGGGGUUAUUCAUGAAUCGCUGUGUUUUUUAUUGUUGC
.((((((.....))))))((((((((((((((((...((((((((((((..((....))))))))))))))...))))))).((.((((.......)))).))...)))))))))..... ( -40.90)
>consensus
UUCGCUCAGGUUGAGCGAGGUGAAAGAGUGAGUGAGUAAUGCUGUGAGCAAUGUAAACAGUUUACGGCAUUCGGCAUUUGCUGG_GGUUAUUCAUGAAUCGCUGUGUUUUUUAUUGUUGC
.((((((.....))))))(((((((((((((((((((((((((((((((..((....)))))))))))..(((((....)))))..)))))))))...)))))....))))))))..... (-35.95 = -36.73 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:04 2006