Locus 683

Sequence ID X_DroMel_CAF1
Location 1,905,329 – 1,905,445
Length 116
Max. P 0.527519
window1096

overview

Window 6

Location 1,905,329 – 1,905,445
Length 116
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 87.92
Mean single sequence MFE -27.88
Consensus MFE -21.65
Energy contribution -22.71
Covariance contribution 1.06
Combinations/Pair 1.04
Mean z-score -1.40
Structure conservation index 0.78
SVM decision value -0.01
SVM RNA-class probability 0.527519
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1905329 116 + 22224390
AUCUUAUCAAAAAAGCACUUACCUAGCUGAAUUUGGUUUCGCUAUUUGGUAAUCCUCUGCGAUUCUAGUAAUUCUAACGAUCGCUGGGCUCGC----UCUCGCUCUCUCCUUCCUCUUGG
.............(((..(((((((((.(((......)))))))...)))))......((((..(((((...((....))..)))))..))))----....)))................ ( -25.60)
>DroSec_CAF1 814 120 + 1
AUCUUAUCAAAAGAGCACUUACCUAGCUGAAUUUGGUUUCGCUAUUUGGUAAUCCUCGGCGAUUCUAGUAAUUCUAACGAUCGCUGGGCUCGCACUCUCUCGCUCUCUGCUGCCUCUUGG
...........(((((..(((((((((.(((......)))))))...)))))......((((..(((((...((....))..)))))..))))........))))).............. ( -30.60)
>DroSim_CAF1 1014 120 + 1
AUCUUAUCAAAAGAGCACUUACCUAGCUGAAUUUGGUUUCGCUAUUUGGUAAUCCUCGGCGAUUCUAGUAAUUCUAACGAUCGCUGGGCUCGCACUCUCUCGCUCUCUCCUGCCUCUUGG
...........(((((..(((((((((.(((......)))))))...)))))......((((..(((((...((....))..)))))..))))........))))).............. ( -30.60)
>DroYak_CAF1 1143 106 + 1
AUCUUAUCAAAAGAGCACUUACCUAGCUGAAUUUGGUUUUGCGAUUUGGUAAUCCUCGGCGAUU---------CUAACGAUCGCAAGG-----GCUCUCUUGCUCUCUCCUUACUCUUGG
.......(((.(((((..(((((..((.((((...)))).)).....))))).(((..(((((.---------(....)))))).)))-----))))).))).................. ( -24.70)
>consensus
AUCUUAUCAAAAGAGCACUUACCUAGCUGAAUUUGGUUUCGCUAUUUGGUAAUCCUCGGCGAUUCUAGUAAUUCUAACGAUCGCUGGGCUCGCACUCUCUCGCUCUCUCCUGCCUCUUGG
...........(((((..(((((((((.(((......)))))))...)))))..((((((((((..............)))))))))).............))))).............. (-21.65 = -22.71 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:01 2006