Locus 6819

Sequence ID X_DroMel_CAF1
Location 16,973,882 – 16,973,989
Length 107
Max. P 0.931540
window11163

overview

Window 3

Location 16,973,882 – 16,973,989
Length 107
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 74.14
Mean single sequence MFE -32.90
Consensus MFE -20.40
Energy contribution -20.63
Covariance contribution 0.23
Combinations/Pair 1.21
Mean z-score -1.82
Structure conservation index 0.62
SVM decision value 1.21
SVM RNA-class probability 0.931540
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16973882 107 + 22224390
-----------UUGUUGUUUCCAAGAGUGCUGAAUGCCAGGAGACUUCUGAUUGUUUUGGCUCCUUUCAUUAUUGGCAGGACUCUUCUGUUGCUGCUGUUGGAAUUUGCUGGGAGAAU--
-----------..((...((((((.(((((.....))(((((((.(((((...((..(((......)))..))...))))).))))))).....))).))))))...)).........-- ( -28.50)
>DroSec_CAF1 1956 108 + 1
-----------UUGUUGUUUCCAAGAGUGUUGCAUGCCAGGAGAUUUCUGAUUCUUUUGGCUCCUUUCAUUUUUUUCAGGACUCUUCUUUUGCUGCUGUCGGAAUUUGCUAUGAGAAU-U
-----------..((...((((.(.(((...(((.(((((((((........)))))))))((((............)))).........))).))).).))))...)).........-. ( -24.40)
>DroEre_CAF1 2177 120 + 1
GCUGGACCCAUUUGGUUUUGCCAGGACUGUUGAAUGCUAGGAGACUUCCGCUUCUUCUGGCUCCUCCCAGUAUUGGCAGAGCCCUUCUGUUGCUGCUGUUGCUGUUUGCCAGGAGAUCCU
...(((.......(((((((((((.((((......(((((((((........)))))))))......)))).)))))))))))((((((..((.((....)).))....)))))).))). ( -45.80)
>consensus
___________UUGUUGUUUCCAAGAGUGUUGAAUGCCAGGAGACUUCUGAUUCUUUUGGCUCCUUUCAUUAUUGGCAGGACUCUUCUGUUGCUGCUGUUGGAAUUUGCUAGGAGAAU_U
.................(((((.((((((......(((((((((........)))))))))......))))...((((((((......))).)))))...........)).))))).... (-20.40 = -20.63 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:40 2006