Locus 6816

Sequence ID X_DroMel_CAF1
Location 16,970,530 – 16,970,633
Length 103
Max. P 0.996972
window11160

overview

Window 0

Location 16,970,530 – 16,970,633
Length 103
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 79.37
Mean single sequence MFE -18.72
Consensus MFE -13.50
Energy contribution -13.14
Covariance contribution -0.36
Combinations/Pair 1.22
Mean z-score -2.88
Structure conservation index 0.72
SVM decision value 2.78
SVM RNA-class probability 0.996972
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16970530 103 + 22224390
UUAAUACUUGUCCCAAAAACAAUUUUACAAGUACAUAGCUUCCAAAAAAUUAGCAAAAACAUCGUUGAUUAGCGAUUAACAAC-----GGUACAAGAUUAUUCCAAAA--
.((((.(((((.((.......................(((...........))).........(((((((...)))))))...-----)).)))))))))........-- ( -14.30)
>DroSec_CAF1 1735 100 + 1
UAAGUACUUGUACCAAAAACAAUUUUACAAAU---UAGUUUCCAAAAAAUUAGCAAAAACAUCGUUGAUAAGCGAUUAACAAC-----GGUGCAAGAAUAUUCCAACA--
......((((((((.................(---((((((.....))))))).......((((((....)))))).......-----))))))))............-- ( -18.40)
>DroSim_CAF1 1453 100 + 1
UUAUUACUUGUACCAAAAACAAUUUUACAAAU---UAGUUUCCAAAAAAUUUGCAAAAACAUCGUUGAUAAGCGAUUAGCAAC-----GGUGCAAGACUAUUCCAACA--
......((((((((........((((.(((((---(...........)))))).))))..((((((....)))))).......-----))))))))............-- ( -19.80)
>DroEre_CAF1 1881 110 + 1
UGAAUACUUGUACCAAAAACAAUUUUGAAUAUAUUUAGUUUCCCGAAAAAUACCAUAAAGAACGUUGAUUAACGAUUACCAACGAUCCGGUACAAGAUUAUUGAAACAAU
......((((((((........(((((................)))))...........((.(((((............))))).)).)))))))).............. ( -17.39)
>DroYak_CAF1 1795 109 + 1
UUAAUACUUGUAUCAAAAACAAUUUUGAAAAUAUUUGGUUUCCC-AAACAUACCAAAAAGAUCGUUGUUCAACGAUUACCAACGAUCCGGUACAAGAUUUUACAAACAAU
......((((((((........(((((...((.(((((....))-))).))..))))).((((((((............)))))))).)))))))).............. ( -23.70)
>consensus
UUAAUACUUGUACCAAAAACAAUUUUACAAAUA__UAGUUUCCAAAAAAUUAGCAAAAACAUCGUUGAUAAGCGAUUAACAAC_____GGUACAAGAUUAUUCCAACA__
......((((((((..............((((.....))))...................((((((....))))))............)))))))).............. (-13.50 = -13.14 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:37 2006