Locus 6815

Sequence ID X_DroMel_CAF1
Location 16,958,894 – 16,959,014
Length 120
Max. P 0.974042
window11159

overview

Window 9

Location 16,958,894 – 16,959,014
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.75
Mean single sequence MFE -43.46
Consensus MFE -36.40
Energy contribution -36.80
Covariance contribution 0.40
Combinations/Pair 1.07
Mean z-score -1.97
Structure conservation index 0.84
SVM decision value 1.72
SVM RNA-class probability 0.974042
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16958894 120 + 22224390
UCGUUUCUCUGGGCGGCGGACGACUGAGCACCGCCGUCACCAUACACUACAUACACAUAGGUGAGUUCGAAAGCAGCAAGUCUUGAGGAUGGACGAGACACGAACGAGUUGGAAACUCUA
((((.((((..((((((((.(......)..)))))))).((((...((.((..(((....))).((((....).)))......)))).))))..)))).))))..((((.....)))).. ( -37.80)
>DroSec_CAF1 2299 120 + 1
UCGUUUCUCUGGGCGGCGGACGACUGAGCACCGCCGUCACCAUCCACUACAUACACAUAGGUGAGUGCGAAAGCAGCAAGUUUUGGGGAUGGACGAGACACGAACGAGUAGGAAACACUA
((((.((((..((((((((.(......)..)))))))).((((((.(((....(((....)))..(((....)))........)))))))))..)))).))))...(((.(....)))). ( -46.90)
>DroSim_CAF1 6903 120 + 1
UCGUUUCUCUGGGCGGCGGACGACUGAGCACCGCCGUCACCAUCCACUACAUACACAUAGGUGAGUGCGAAAGCGGGAAGUUUUGGGGAUGGACGAGACACGAACGAGUUGGAAACUCUA
((((.((((..((((((((.(......)..)))))))).((((((.(((....(((....)))..(((....)))........)))))))))..)))).))))..((((.....)))).. ( -46.10)
>DroEre_CAF1 56 120 + 1
UCGUUUCUCUGGGCGGCGGACGACUGAGCACCGCCGUCACCAUCCACUACAUACACAUAGGUGAGUACGAUUGCGGCAAGCCUUGGGGAUGGACGAGACACGAAGGAGUUGAAAACUCUA
((((.((((..((((((((.(......)..)))))))).((((((.(((.........((((..((.((....))))..)))))))))))))..)))).)))).(((((.....))))). ( -44.40)
>DroYak_CAF1 56 115 + 1
UCGUUUCUCUGGGCGGCGGACGACUGAGCACCGCCGUCACCAUCCACUACAUACACAUAGGUGAGUGUGAGUGCGGCACGCCUUGGGGAUGGACGAAACACGAAC-----GGAAACACUA
..(((((....((((((((.(......)..)))))))).((((((.((((((.(((((......))))).))).((....)).)))))))))..)))))......-----(....).... ( -42.10)
>consensus
UCGUUUCUCUGGGCGGCGGACGACUGAGCACCGCCGUCACCAUCCACUACAUACACAUAGGUGAGUGCGAAAGCGGCAAGUCUUGGGGAUGGACGAGACACGAACGAGUUGGAAACUCUA
((((.((((..((((((((.(......)..)))))))).((((((........(((....)))..(((....)))...........))))))..)))).)))).......(....).... (-36.40 = -36.80 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:23:36 2006