| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,885,062 – 16,885,162 |
| Length | 100 |
| Max. P | 0.638539 |
| Location | 16,885,062 – 16,885,162 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 93.50 |
| Mean single sequence MFE | -26.38 |
| Consensus MFE | -21.40 |
| Energy contribution | -21.08 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638539 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16885062 100 - 22224390 AAAACACUGUGAUACUGUGAAAACAAUGUUGGCAAAUGGGAAACGGAAAACGUUUCAUGCAUAUGCAAGUUUCUGUGUUAAUUGUGUUGUCGUGUUUCUG .((((((.(..(((((((....)))..(((((((...((((((((.....)))))).(((....)))....))..))))))).))))..).))))))... ( -26.80) >DroSec_CAF1 84372 100 - 1 AAAACACUGUGAUACUGGGAAAACAAUGUUGGCAAAUGGGAAACGGCAAACGUUCCAUGCAUAUGCAAGUUCCUGUGUUGAUUGUGUUGUCGUGUCUCUG ..(((((..((((((.(((((.....(((..(((....((((.((.....)))))).)))....)))..)))))))))))...)))))............ ( -24.10) >DroSim_CAF1 64702 100 - 1 AAAACACUGUGAUACUGGGAAAACAAUGUUGGCAAAUGGGAAACGGCAAACGUUCCAUGCAUAUGCAAGUUCCUGUGUUAAUUGUGUUGUCGUGUCUCUG ..(((((..((((((.(((((.....(((..(((....((((.((.....)))))).)))....)))..)))))))))))...)))))............ ( -25.40) >DroEre_CAF1 69028 100 - 1 AAAGCACUGUGAUACAGGGAAAACAAUGCUGGCAAAUGGGAAACGGAAAAAGUUCCAUGCAUAUGCAAGUUCCUGUGUUAAUUGUGUUGUCGUGUUUCUG ..(((((..(((((((((((......(((..(((....(....)((((....)))).)))....)))..)))))))))))...)))))............ ( -29.90) >DroYak_CAF1 70665 100 - 1 AAAACACUGUGAUACAGGGAAAACAAUGUUGGCAAAUGGAAAACGGCAAACGUUCCAUGCAUAUGCAAGUUGCUGUGUUAAUUGUGUUGUCCCGCUUCUG ..(((((..((((((((.((.....((((..(((..((((..(((.....)))))))))))))).....)).))))))))...)))))............ ( -25.70) >consensus AAAACACUGUGAUACUGGGAAAACAAUGUUGGCAAAUGGGAAACGGCAAACGUUCCAUGCAUAUGCAAGUUCCUGUGUUAAUUGUGUUGUCGUGUUUCUG ..(((((..((((((.(((((.....(((..(((..((((..(((.....))))))))))....)))..)))))))))))...)))))............ (-21.40 = -21.08 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:53 2006