Locus 6772

Sequence ID X_DroMel_CAF1
Location 16,836,694 – 16,836,788
Length 94
Max. P 0.505862
window11092

overview

Window 2

Location 16,836,694 – 16,836,788
Length 94
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 67.79
Mean single sequence MFE -25.18
Consensus MFE -9.66
Energy contribution -12.25
Covariance contribution 2.59
Combinations/Pair 1.21
Mean z-score -1.65
Structure conservation index 0.38
SVM decision value -0.05
SVM RNA-class probability 0.505862
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16836694 94 - 22224390
UAG--------------------------AAAUAUCCACGAUUAUGUAUACUCGGUGGAUACAAUUGCGUCGCUCUGGCGCUUUCUUGGGAAGUAACCAAGAAGUAUGCAUCGGAUUUCA
..(--------------------------((..((((..((.((....)).))((((.((((....(((((.....))))).(((((((.......))))))))))).))))))))))). ( -29.40)
>DroPse_CAF1 28687 77 - 1
-AG--------------------------ACCUCUCCACUUUUCUG---------UGACUGCAAAUAUA-------ACCUGUACCCUGCGAAGGGUAUCAAAAGUGUGCCCUGUAUUUUC
-..--------------------------.......(((((((.((---------(....)))......-------....(((((((....))))))).))))))).............. ( -14.60)
>DroSec_CAF1 34237 94 - 1
UAG--------------------------AAAUAUCCACGAUUAUGUAUACUCGGUGGAUACAAUUCCGUCGCUCUAGCGCUUUCUUGGGAAGUAACCAAGAAGUAUGCAUCGGAUUUCA
..(--------------------------((((.....(((...(((((((..(..(((......)))..)((....))...(((((((.......))))))))))))))))).))))). ( -27.90)
>DroSim_CAF1 19713 94 - 1
UAG--------------------------AAAUAUCCACGGUUAUGUAUACUCGGUGGAUACAAUUCCGUCGCUCUAGCGCUUUCUUGGGAAGUAACCAAGAAGUAUGCAUCGGAUUUCA
..(--------------------------((((((((((.(...........).)))))))....((((..((......((((.(((((.......)))))))))..))..)))))))). ( -27.40)
>DroEre_CAF1 22047 120 - 1
UAGGUACGUAGAUACGUAGAUACAUAGAUAUAUAACCAUAGAUAUGCAUACCCGGUGGAUAGAAUUGCGUCGCGCUGCCGGUUUCCUGGGAAGUUUCCAAGAAGUAUGCAUCGGAUUUCA
..(((((((....))))......(((....))).)))......((((((((((((..(...((......))...)..)))).(((.(((((...))))).)))))))))))......... ( -29.80)
>DroYak_CAF1 20033 94 - 1
UAG--------------------------AAAUAUUCACGAUUAUCUAUACUCGGUGAAUACAAUUCAGUCGCUCUGCCGCUUCCUUUGGAAGUUCCCAAGAAGUGUGCAUCGGAUUUCA
..(--------------------------((((((((((((.((....)).)).)))))).........(((...(((((((((..((((......)))))))))).))).)))))))). ( -22.00)
>consensus
UAG__________________________AAAUAUCCACGAUUAUGUAUACUCGGUGGAUACAAUUCCGUCGCUCUACCGCUUUCUUGGGAAGUAACCAAGAAGUAUGCAUCGGAUUUCA
...................................................((((((.((((.........((......)).(((((((.......))))))))))).))))))...... ( -9.66 = -12.25 +   2.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:22:35 2006