| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,760,264 – 16,760,361 |
| Length | 97 |
| Max. P | 0.770907 |
| Location | 16,760,264 – 16,760,361 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 87.62 |
| Mean single sequence MFE | -22.75 |
| Consensus MFE | -17.38 |
| Energy contribution | -17.25 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.770907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16760264 97 - 22224390 CCAAAGAUUUUUAUGGCUGC-UGCGUGUGGGUUAAUUUUCGUAUAUAUCGUAUAUAGUACAUGAAA-AAACGCGACACGCGCCA-AACGUCAUUAAA------AAG .......((((((((((((.-(((((((.((((..(((((((.(((..........))).))))))-)))).).))))))).))-...)))).))))------)). ( -22.60) >DroSec_CAF1 47121 92 - 1 CCAAAGAUUUUUAUGGCUGUGUGCGUG--------UUUUCGUAUAUAUCGUAUAUAGUACAUGAAAAAAAAGCGACACGCGCCAAAACGUCAUUAAA------AAG .....(((.(((.((((.((((((((.--------(((((((.(((..........))).)))))))....))).)))))))))))).)))......------... ( -23.40) >DroSim_CAF1 45046 99 - 1 CCAAAGAUUUUUAUGGCUGC-UGCGUGUGGGUUAAUUUUCGUAUAUAUCGUAUAUAGUACAUGAAAAAAACGCGACACGCGCCAAAACGUCAUUAAA------AAG .....(((.(((.((((...-.((((((.((((..(((((((.(((..........))).))))))).))).).))))))))))))).)))......------... ( -23.00) >DroYak_CAF1 39222 104 - 1 CCAAAGAUUUUUAUGGCUGC-UGCGUGUGGGUUAAUUUUUGUAUAUGUCGCAUAUAGUACAUAAAAAAAGCGCGACACGCGCCA-AACGUCAUUAAAAAAAAAAAA .......((((((((((((.-(((((((.((((..(((((((((((((...)))).))))).))))..))).).))))))).))-...)))).))))))....... ( -22.00) >consensus CCAAAGAUUUUUAUGGCUGC_UGCGUGUGGGUUAAUUUUCGUAUAUAUCGUAUAUAGUACAUGAAAAAAACGCGACACGCGCCA_AACGUCAUUAAA______AAG .....(((.....((((.((.(((((((.......(((((((.(((((...)))))....)))))))..))))).)).))))))....)))............... (-17.38 = -17.25 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:43 2006