Locus 6737

Sequence ID X_DroMel_CAF1
Location 16,756,656 – 16,756,840
Length 184
Max. P 0.997092
window11010 window11011

overview

Window 0

Location 16,756,656 – 16,756,760
Length 104
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.96
Mean single sequence MFE -32.42
Consensus MFE -27.78
Energy contribution -28.10
Covariance contribution 0.32
Combinations/Pair 1.10
Mean z-score -2.63
Structure conservation index 0.86
SVM decision value 2.80
SVM RNA-class probability 0.997092
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16756656 104 + 22224390
----------------CAAUGGUUGUUGUUAGCGUUAUGCGACUGCCAUUGUUGUAUUGCUGUAGAAUGAUAAGCUGUCUCUAUCAAUCAGCCAUUGACUUAUGUCGAUGGCCUCUCGUC
----------------(((((((.(((((.........))))).))))))).((.((((..(((((..(((.....))))))))))))))(((((((((....)))))))))........ ( -32.50)
>DroSec_CAF1 43644 99 + 1
----------------CAAUGGUUGUUGUUGGCGUUAUGCGACUGCCAUUGUUGUAUUGC----GAGUGAUAAGCUGUCUCUAUCAAUCAGCCAUUGACUUAUGUCGAUGGUCUCUCGU-
----------------(((((((.(((((.........))))).))))))).......((----(((.(((..((((...........))))(((((((....)))))))))).)))))- ( -34.50)
>DroSim_CAF1 40831 99 + 1
----------------CAAUGGUUGUUGUUGGCGUUAUGCGACUGCCAUUGUUGUAUUGC----GAGUGAUAAGCUGUCUCUAUCAAUCAGCCAUUGACUUAUGUCGAUGGCCUCUCGU-
----------------(((((((.(((((.........))))).))))))).......((----((((((((.........)))))....(((((((((....)))))))))..)))))- ( -34.60)
>DroEre_CAF1 35026 99 + 1
----------------CAAUGGUUUUUGUAAGCGUUAGGCGACUUUCAUUGUUGUAUUCC----GAGUGAUAAGCUGGCUCUAUCAAUCAGCCAUUGACUUAUGUCGAUGGCCUCUCGU-
----------------.((((.((.....)).))))..(((((.......)))))....(----((((((((((....)).)))))....(((((((((....)))))))))..)))).- ( -27.30)
>DroYak_CAF1 35473 115 + 1
CGAUGGUUCAAUGGUUUAAUGGUUGUUGUAAGCGUUAUGCGACUUCCAUUGUUGUAUUCC----AAGUGAUAAGCUGUCUCUAUCAAUCAGCCAUUGACUUAUGUCGAUGGCCUCUCGU-
.(((((((((.(((..((((((..((((((.......))))))..)))))).......))----)..)))...))))))...........(((((((((....))))))))).......- ( -33.20)
>consensus
________________CAAUGGUUGUUGUUAGCGUUAUGCGACUGCCAUUGUUGUAUUGC____GAGUGAUAAGCUGUCUCUAUCAAUCAGCCAUUGACUUAUGUCGAUGGCCUCUCGU_
................(((((((.(((((.........))))).))))))).............((.(((((((....)).))))).)).(((((((((....)))))))))........ (-27.78 = -28.10 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 16,756,720 – 16,756,840
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.66
Mean single sequence MFE -28.74
Consensus MFE -28.14
Energy contribution -27.78
Covariance contribution -0.36
Combinations/Pair 1.10
Mean z-score -1.71
Structure conservation index 0.98
SVM decision value 2.58
SVM RNA-class probability 0.995449
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16756720 120 + 22224390
CUAUCAAUCAGCCAUUGACUUAUGUCGAUGGCCUCUCGUCGCGGCUUUAGGGCCUAAGUACACACCGAAUCGAAGAUUAAUUGAUUUUAAACGAUCUAUUAGACUGAUAUGCCAGUGGAA
.(((((.((.(((((((((....)))))))))...((((...((((....))))............(((((((.......)))))))...)))).......)).)))))........... ( -30.20)
>DroSec_CAF1 43704 110 + 1
CUAUCAAUCAGCCAUUGACUUAUGUCGAUGGUCUCUCGU---GGCUUUAGGGCCUAAGUACACACCGAAUCGAAGAUUAAUUGAUUUUAAACGAUCUAUUAGACUGAUACGCC-------
.(((((.((.(((((((((....)))))))))...((((---((((....))))............(((((((.......)))))))...)))).......)).)))))....------- ( -28.40)
>DroSim_CAF1 40891 110 + 1
CUAUCAAUCAGCCAUUGACUUAUGUCGAUGGCCUCUCGU---GGCUUUAGGGCCUAAGUACACACCGAAUCGAAGAUUAAUUGAUUUUAAACGAUCUAUUAGACUGAUACGCC-------
.(((((.((.(((((((((....)))))))))...((((---((((....))))............(((((((.......)))))))...)))).......)).)))))....------- ( -30.40)
>DroEre_CAF1 35086 117 + 1
CUAUCAAUCAGCCAUUGACUUAUGUCGAUGGCCUCUCGU---GGCUUUAGGGCUUAAGUACACCCCGAAUCGAAGAUUAAUUGGUUUUAAACGAUCUAUUAGACUGAUACGCCUGUGAAA
..........(((((((((....))))))))).((.((.---(((((..(((..........)))..))..........((..((((.............))))..))..))))).)).. ( -27.42)
>DroYak_CAF1 35549 106 + 1
CUAUCAAUCAGCCAUUGACUUAUGUCGAUGGCCUCUCGU---GGCUUUAGGGCUUAAGUACACACCGAAUCGAAGAUUAAUUGAUUUUAAACGAUCUAUUAGACUGAU-----------A
.(((((.((.(((((((((....)))))))))...((((---((((....))))............(((((((.......)))))))...)))).......)).))))-----------) ( -27.30)
>consensus
CUAUCAAUCAGCCAUUGACUUAUGUCGAUGGCCUCUCGU___GGCUUUAGGGCCUAAGUACACACCGAAUCGAAGAUUAAUUGAUUUUAAACGAUCUAUUAGACUGAUACGCC______A
.(((((.((.(((((((((....)))))))))...((((...((((....))))............(((((((.......)))))))...)))).......)).)))))........... (-28.14 = -27.78 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:21:26 2006