Locus 672

Sequence ID X_DroMel_CAF1
Location 1,870,059 – 1,870,154
Length 95
Max. P 0.638619
window1083

overview

Window 3

Location 1,870,059 – 1,870,154
Length 95
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 82.22
Mean single sequence MFE -24.40
Consensus MFE -15.22
Energy contribution -17.17
Covariance contribution 1.95
Combinations/Pair 1.03
Mean z-score -2.09
Structure conservation index 0.62
SVM decision value 0.22
SVM RNA-class probability 0.638619
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1870059 95 + 22224390
GUUGGAUUGAAUCGACUUAAUAGUUGAUUAGUUUGGAGAAAACAC-------------------------AACAAUGUUGAGUUACAACUAAAAAUUUGAUUUAUCUAAGUGAGCAUAUA
.((((((.(((((((.((..((((((....((((.....)))).(-------------------------(((...)))).....))))))..)).)))))))))))))........... ( -18.40)
>DroSec_CAF1 7365 120 + 1
GUUCAAUUGGAUCGACUUUAUAGUUGAUUAGUUUGGAGAAAACACAAAGUGCAACACAAACACAGUGUGCAACAAAGUUGAGUUACAACUAAACAAUUGAUUUAUCUAAGUGAGCAUAUA
(((((.(((((((((((....))))))...((((((....(((.(((..((((.(((.......)))))))......))).)))....))))))..........))))).)))))..... ( -28.90)
>DroSim_CAF1 2622 120 + 1
GUUGGAUUGGAUCGACUUUAUAGUUGAUUAGUUUGGAGAAAACACAAAGUGCAACACAAACACAGUGUGCAACAAAGUUGAGUUACAACUAAAAAUUUGAUUUAUCUAAGUGAGCAUAUA
.((((((.(((((((.(((.((((((....((((.....)))).(((..((((.(((.......)))))))......))).....)))))).))).)))))))))))))........... ( -25.90)
>consensus
GUUGGAUUGGAUCGACUUUAUAGUUGAUUAGUUUGGAGAAAACACAAAGUGCAACACAAACACAGUGUGCAACAAAGUUGAGUUACAACUAAAAAUUUGAUUUAUCUAAGUGAGCAUAUA
.((((((.(((((((.(((.((((((....((((.....))))......((((.(((.......)))))))..............)))))).))).)))))))))))))........... (-15.22 = -17.17 +   1.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:49 2006