| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,736,277 – 16,736,387 |
| Length | 110 |
| Max. P | 0.841679 |
| Location | 16,736,277 – 16,736,387 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.19 |
| Mean single sequence MFE | -32.38 |
| Consensus MFE | -23.58 |
| Energy contribution | -24.26 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.841679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16736277 110 - 22224390 ---GCGACAGCAACGGGAGCAGCGAAUUGGAAGGUUACCCCUUUUGGGUGACC-------CCACGCAUUACAAAUGCACUACAGCAUUCUACGCUGAAUGUUUUAAUGCUCUUAACUAUA ---((....))...((((((((((...(((..((((((((.....))))))))-------)))))).............((.(((((((......))))))).)).)))))))....... ( -35.40) >DroSec_CAF1 23921 108 - 1 ---GCGACAGCAACGGGAGCAGCGAAUUGGAAGAUUACCCCU-UUGGGUGACC-------CCACGUAUUGCAAAUGCACUA-AGCAUUCUUCGCUGAAUGUUUUAAUGCUCUCAACUAUA ---((....))...(((((((((((..(((....((((((..-..))))))..-------)))....)))).........(-(((((((......))))))))...)))))))....... ( -31.80) >DroSim_CAF1 22287 108 - 1 ---GCGACAGCAACGGGAGCAGCGAAUUGGAAGGUUACCCCU-UUGGGUGACC-------CCACGCAUUGCAAAUGCACUA-AGCAUUCUUCGCUGAAUGUUUUAAUGCUCUUAACUAAA ---((....))...((((((((((...(((..((((((((..-..))))))))-------))))))..(((....)))..(-(((((((......))))))))...)))))))....... ( -37.60) >DroEre_CAF1 15289 114 - 1 ---GCGACAGCAACGGGAGCAGCGAAUAGGAAGGUUACCACU-UUGGGUGACCCCACACCCCACGAAUUAUAAAUGCACUU-AACAUUCUACGUUAAAGGUUU-CAGGCUCGCAACUAUC ---((((..((....(((((........((..(((((((...-...)))))))))........................((-(((.......)))))..))))-)..))))))....... ( -25.20) >DroYak_CAF1 15223 117 - 1 GAAGCGACAGCAACGGGAGCAGCGAAUGGGAAGGUUACCACU-UUUGGUGACCCCAAACCCCACGAAUUACAAAUGCACUU-AACAUUCUUCGACAAAAGUUC-CAUGCUCUCAGCAAUU ...((((.((((...(((((......((((..((((((((..-..))))))))......))))((((.....((((.....-..)))).))))......))))-).)))).)).)).... ( -31.90) >consensus ___GCGACAGCAACGGGAGCAGCGAAUUGGAAGGUUACCCCU_UUGGGUGACC_______CCACGAAUUACAAAUGCACUA_AGCAUUCUUCGCUGAAUGUUUUAAUGCUCUCAACUAUA ...((....))...(((((((......(((..((((((((.....))))))))...........((((.....)))).))).(((((((......)))))))....)))))))....... (-23.58 = -24.26 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:28 2006