| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,727,022 – 16,727,112 |
| Length | 90 |
| Max. P | 0.761405 |
| Location | 16,727,022 – 16,727,112 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 63.95 |
| Mean single sequence MFE | -20.37 |
| Consensus MFE | -9.35 |
| Energy contribution | -8.80 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.761405 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16727022 90 - 22224390 ----AUAUGCAUAUG-----AUGCAUAUAU---AUAGUUAGUAUAUGCAUGUCGCAAUAGCCCUGGCCGCUAAAUUGCACGAAUUAGGCGGUUUAUCUAUUG ----(((((((((((-----..((......---...))...)))))))))))..((((((....(((((((.((((.....)))).)))))))...)))))) ( -26.40) >DroSec_CAF1 7858 78 - 1 ----AUGUGCAUAUG-----AUGUAUAUAUAGUAUAGUAAGUAUAUGCAUGUC---------------GCUAAAAUGCACGAAUUAGGCGGUUUAUCUAUGG ----..(((((((((-----.(((((.....))))).....))))))))).((---------------(((..(((......))).)))))........... ( -14.50) >DroYak_CAF1 6863 89 - 1 AACUAUAUCUAUCUCGGUAUGUGCAUAUGC---AUA-UUAAUAUAUGCAUGUCGCAUUGGCCCUGCCCGCUAAAUUGUACGAAU---------UAUCUAUCG .............(((...((((.((((((---(((-(....))))))))))))))(((((.......)))))......)))..---------......... ( -20.20) >consensus ____AUAUGCAUAUG_____AUGCAUAUAU___AUAGUUAGUAUAUGCAUGUCGCA_U_GCCCUG_CCGCUAAAUUGCACGAAUUAGGCGGUUUAUCUAUCG ....................((((((((((..........))))))))))..................((......))........................ ( -9.35 = -8.80 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:16 2006