Locus 6694

Sequence ID X_DroMel_CAF1
Location 16,720,982 – 16,721,101
Length 119
Max. P 0.788058
window10924

overview

Window 4

Location 16,720,982 – 16,721,101
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 72.77
Mean single sequence MFE -32.74
Consensus MFE -17.06
Energy contribution -19.84
Covariance contribution 2.78
Combinations/Pair 1.22
Mean z-score -1.79
Structure conservation index 0.52
SVM decision value 0.58
SVM RNA-class probability 0.788058
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16720982 119 - 22224390
UGCCCAAUUCCGCCAUGGAGCCUUCUUCUGGGUACAAUGGGCA-AUGUCCAAAUGGUGUUUGCACACCUUUUUAUUCAACCGCCUGUUGGACUGCAGGCGGCGAAUCUCAGUCCUCCUCU
((((((..(((.....)))((((......))))....))))))-..........(((((....))))).....((((..((((((((......)))))))).)))).............. ( -37.90)
>DroSec_CAF1 1227 119 - 1
UCCCCAAUUCCGCCAUGGAGCUUUCUUCUGGGUACAAUGGGCA-AUGUCCAAAUGGCGUUCGCACACCUUUUUAUUCAACCGCUUGUUGGACUGCAGGCGGCGAAUCUCAGUCCUCCUCU
................((((.......(((((.....((.(((-(((((.....)))))).)).)).......((((..((((((((......)))))))).)))))))))..))))... ( -29.00)
>DroSim_CAF1 1483 119 - 1
UCCCCAAUUCCGCCAUGGAGCCUUCUUCUGGGUACAAUGGGCA-AUGUCCAAAUGGCGUUCGCUGACCUUUUUAUUCAACCGCUUGUUGGACUGCAGGCGGCGAAUCUCAGUCCUCCUAU
..........((((((.(.((((......)))).)..(((((.-..))))).))))))(((((((.(((.....((((((.....))))))....))))))))))............... ( -34.10)
>DroEre_CAF1 1144 113 - 1
UGCCCAUUUCAACAAUGG---CUUCUUUUGGUCGCCAC---CAAAUG-CGACAUGGAAAUGGCCCACCUUUUGUUCCGUCCGCUUGUUCUCUAGCAGGCGGCGAAGCACCUUCCUUCUCC
...(((((((..(((...---......)))(((((...---.....)-))))...))))))).........((((.((.((((((((......)))))))))).))))............ ( -33.20)
>DroYak_CAF1 1338 104 - 1
UGCCAAAUUCU------U---CUUCUUUUGGUCACCAC---CACAUG-UGAAAUGGAAAUUGGCCACUCUUUCUUCCGAUCGCCUGUUCUCCAGCAGGCGGCGAA---UCCUCCUCCUCC
.(((((.((((------.---.(((...((((....))---))....-.)))..)))).)))))............((.((((((((......))))))))))..---............ ( -29.50)
>consensus
UGCCCAAUUCCGCCAUGGAGCCUUCUUCUGGGUACAAUGGGCA_AUGUCCAAAUGGAGUUCGCACACCUUUUUAUUCAACCGCUUGUUGGACUGCAGGCGGCGAAUCUCAGUCCUCCUCU
......((((((((((...((((......))))....(((((....))))).)))))).....................((((((((......)))))))).)))).............. (-17.06 = -19.84 +   2.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:20:07 2006