| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,664,061 – 16,664,172 |
| Length | 111 |
| Max. P | 0.716213 |
| Location | 16,664,061 – 16,664,172 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 91.37 |
| Mean single sequence MFE | -28.24 |
| Consensus MFE | -23.02 |
| Energy contribution | -24.26 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.716213 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16664061 111 - 22224390 UUAUACACUAGGGUACGUCCAAAGUUCAGAUAUGAAAGUUAUGAAGCUCUCAGCUGACAGCAUAUCCACAUCGAUUAUGCUAUAUGGCCACUUUUGCU-GGACGCUUUUCCA ..........(((..((((((((((((((...(((.((((....)))).))).)))).((((((((......)).))))))........))))....)-)))))....))). ( -26.20) >DroSec_CAF1 3031 111 - 1 AUAAACACUAGGGUGCGUCCAAAGUCCAGAUAUGAAAGUUUUGAAGCUCCCAGCUGACAGCAUAUCCACAUCGAUUAUGCUAUAUGGCCACUUUUGCU-GGACGCUUUUCCA ..........(((.(((((((..(((.((...((..((((....))))..)).)))))((((((((......)).))))))................)-))))))...))). ( -28.30) >DroSim_CAF1 3448 112 - 1 AUAAACACUAGGGUGCGUCCAAAGUCCAGAUAUGAAAGUUUUGAAGCUCCCAGCUGACAGCAUAUCCACAUCGAUUAUGCUAUAUGGCCACUUUUGCUUGGACGCUUUUCCA ..........(((.((((((((.(((.((...((..((((....))))..)).)))))((((((((......)).))))))................))))))))...))). ( -29.20) >DroEre_CAF1 4196 110 - 1 CUA-CCACUUGGGCACGUCCAAAGUCCAGAUAUGAAAGGUUUGAAGCUCUCAGAUGACAGCAUAUCCACAUCGAUUAUGCUAUAUGGCCACUUUUGCU-GGACGCUUUUCCA ...-....(((((....))))).((((((....(((((((((((.....))))))...((((((((......)).)))))).........))))).))-))))......... ( -26.60) >DroYak_CAF1 2777 103 - 1 --------UAGGGUGUGUCCAAAGUCCAGAUACGAAAGUGUUGAAGCUCUCAGCUGACAGCAUAUCCACAUCGAUUAUGCUAUAUGGCCACUUUUGCU-GGACGCUUUUCCA --------..(((.(((((((..(((..(((((....)))))..(((.....))))))((((((((......)).))))))................)-))))))...))). ( -30.90) >consensus AUA_ACACUAGGGUGCGUCCAAAGUCCAGAUAUGAAAGUUUUGAAGCUCUCAGCUGACAGCAUAUCCACAUCGAUUAUGCUAUAUGGCCACUUUUGCU_GGACGCUUUUCCA ..........(((.((((((...((.(((...(((.(((......))).))).)))))((((((((......)).))))))..................))))))...))). (-23.02 = -24.26 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:42 2006