Locus 6668

Sequence ID X_DroMel_CAF1
Location 16,652,350 – 16,652,452
Length 102
Max. P 0.500000
window10890

overview

Window 0

Location 16,652,350 – 16,652,452
Length 102
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 83.41
Mean single sequence MFE -19.96
Consensus MFE -12.59
Energy contribution -13.34
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.64
Structure conservation index 0.63
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16652350 102 + 22224390
GAUAGG----UCGAGUUCAGGCUCCCUUUGUUUUCGGCUUAUCUUUUGAUCCCGCAUGAACUC-----GCCGGCACACUCUCCUUCCCAUUUUCCAGUAUUUUUCAUUUUU------
((((((----(((((..((((.....))))..))))))))))).......((.((........-----)).))......................................------ ( -18.60)
>DroSec_CAF1 11090 108 + 1
GAUAGG----UCGAGUUCAGGCUCCCUUUGUUUUCGGCUUAUCUUUUGAUCCCGCAUGAUCUC-----GCCGGCACUCUCUCCUUCCCAUUUCCCACUAUUUUCCAUCAUUUUCUAU
((((((----(((((..((((.....))))..))))))))))).......((.((........-----)).))............................................ ( -18.60)
>DroSim_CAF1 12339 102 + 1
GAUAGG----UCGAGUUCAGGCUCCCUUUGUUUUCGGCUUAUCUUUUGAUCCCGCAUGAACUC-----GCCGGCACUCUCUCCUUCCCAUUUCCCACUAUUUUCCAUCAUU------
(((.((----.((((((((.((.......(....)((...(((....))).)))).)))))))-----)))((........))......................)))...------ ( -18.70)
>DroEre_CAF1 11489 106 + 1
GAUAGGUCAGUCGAGUUCGGGCUUCCUUUGUUUUCGGGUUAUCUCUUGAUCCCACAUGAACUUCCCCGGCCGGCACUCUUUCCUUCCUAUUUUCCAUUAUUUU-----AGU------
((((((......((((.(.((((......((((..((((((.....)))))).....))))......)))).).)))).......))))))............-----...------ ( -23.92)
>consensus
GAUAGG____UCGAGUUCAGGCUCCCUUUGUUUUCGGCUUAUCUUUUGAUCCCGCAUGAACUC_____GCCGGCACUCUCUCCUUCCCAUUUCCCACUAUUUUCCAUCAUU______
((.(((......((((.(.(((.......((((.(((...(((....))).)))...)))).......))).).))))...)))))............................... (-12.59 = -13.34 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:36 2006