| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,638,588 – 16,638,699 |
| Length | 111 |
| Max. P | 0.595890 |
| Location | 16,638,588 – 16,638,699 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 82.66 |
| Mean single sequence MFE | -41.65 |
| Consensus MFE | -25.89 |
| Energy contribution | -27.70 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.595890 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16638588 111 - 22224390 UAAGAAAGAGAUCAGAGCGCUGUUCCUCGCUGAGAUGGGAAUGCCGCUGCAGUUGGGCGGUCAGAAGGCCGAACAGCGACGGCGUGGAGGG-----AGGAUGAACCGUUGAUGGUA ..........((((.((((....(((((.((.....((.....))((((..((((..(((((....)))))..))))..))))....)).)-----)))).....))))..)))). ( -38.70) >DroPse_CAF1 1488 112 - 1 GCAAGAAGAGAUCGGCUCGCUGCUCCUCGCUAAGGUGCGAGUGACGCUGAAGCUGGGCGGUUAGAAGUCCGAACAAUGACGGU--UGAAGGGGCUGGGACGUAGC--UUGAGUUGG ............((((((((((((((((((......))))).))((((.......))))(((...(((((...((((....))--))...)))))..))))))))--..)))))). ( -36.20) >DroSec_CAF1 1547 111 - 1 UAAGAAAGAGAUCAGAGCGCUGUUCCUCGCUGAGAUGCGAAUGCCGCUGCAGUUGGGCGGUCAGAAGGCCGAACAGCGAUGGCGUCGAGGA-----AGGAGGCGCUGUUGAUGGUA ..........(((((((((((.((((((((......))((.(((((.....((((..(((((....)))))..))))..))))))))))))-----)...)))))).))))).... ( -46.10) >DroSim_CAF1 949 111 - 1 UAAGAAAGAGAUCAGAGCGCUGUUCCUCGCUGAGAUGCGAAUGCCGCUGCAGUUGGGCGGUCAGAAGGCCGAACAACGAUGGCGUCGAGGA-----AGGAGGCGCUGUUGAUGGUA ..........(((((((((((.((((((((......))((.(((((.....((((..(((((....)))))..))))..))))))))))))-----)...)))))).))))).... ( -46.10) >DroEre_CAF1 1285 111 - 1 UGAGAAAGAGAUCAGAGCGCUGUUCCUCGCUGAGAUGCGAAUGCCGCUGCAGUUGGGCUGUCAGAAGGCCGAAAAGCGAGGGCGUGGACGG-----AGGAGUAGCUGUUGACGGUG ...........((((((((((.((((((((......))))(((((.((((..((.((((.......)))).))..)).)))))))....))-----)).))).))).))))..... ( -37.50) >DroYak_CAF1 938 111 - 1 UCAGAAAGAGAUCAGAGCGCUGUUCCUCGCUGAGAUGCGAAUGCCGUUGCAGUUGGGCGGUCAGAAGCCCGAACAGCGAGGGCGUGGACGG-----AGGAGGAGCUGUUGAUGGUG ..........((((.((((((.((((((((......))..(((((.((((..((((((........))))))...)))).))))).....)-----))))).))).)))..)))). ( -45.30) >consensus UAAGAAAGAGAUCAGAGCGCUGUUCCUCGCUGAGAUGCGAAUGCCGCUGCAGUUGGGCGGUCAGAAGGCCGAACAGCGACGGCGUGGAGGG_____AGGAGGAGCUGUUGAUGGUA ..........(((((...(((.((((((((......))))....(((((..((((..(((((....)))))..))))..))))).............)))).)))..))))).... (-25.89 = -27.70 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:34 2006