Locus 6658

Sequence ID X_DroMel_CAF1
Location 16,613,535 – 16,613,639
Length 104
Max. P 0.948156
window10872

overview

Window 2

Location 16,613,535 – 16,613,639
Length 104
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.32
Mean single sequence MFE -18.24
Consensus MFE -10.18
Energy contribution -10.62
Covariance contribution 0.44
Combinations/Pair 1.07
Mean z-score -2.29
Structure conservation index 0.56
SVM decision value 1.38
SVM RNA-class probability 0.948156
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16613535 104 - 22224390
UCAGCCUACUUGGAUUAC---------UU-------AUAUUCAUUACAACUUCCGAAUAGGGUCAUUUAUUUUGCUUUAUCUUCGAGCGACCCUCUUGACAUUUCUUUUCAAUAAAUUAU
....((((.(((((....---------..-------...............))))).))))((((......((((((.......))))))......)))).................... ( -17.40)
>DroSec_CAF1 25824 104 - 1
UCAGUUCAGUUGGAAUAC---------UU-------AUGUUCAUUACAACUUCCGAAUAGUGUCAUUUAUUUCGCUUUAUCUUCGAGCGACCCUCUUGACAUUUCUUUUCAUUGAAUUAU
..((((((((.((((...---------..-------.(((.....)))..))))(((.(((((((......((((((.......))))))......)))))))....))))))))))).. ( -22.50)
>DroSim_CAF1 23787 103 - 1
GCA-UUCCAAGGGAUUGC---------UU-------AUGUUCAUUACAACUUCCGAAUAGGGUCAUUUAUUUCGCUUUAUCUUCGAGCGACCCUCUUGACAUUUCUUUUCAUUGAAUUAU
(((-.(((...))).)))---------..-------..(((((.........((.....))((((......((((((.......))))))......))))............)))))... ( -19.90)
>DroEre_CAF1 25865 113 - 1
UCAGUUUGCUUGCAUCUCCCAGCCAUAUU-------AUAUUGAUUACAACUUCCGAAUAGGGUCAUUUAUUUCGCUUUAUCUUCCAGCGACCCUCUUGACAUUUCUUUUCAAUGAAUUAU
.......(((.(......).)))......-------.((((((.........((.....))((((......(((((.........)))))......))))........))))))...... ( -14.60)
>DroYak_CAF1 27320 107 - 1
-------------AUCUCUUACCAUUAUUCAUUUCAUUAUUCAUUACAACUUCCGAAGAGGGUCAUUUAUUUCGCUUUAUCUGCGUACGACCCUCUUGACAUUUCUUUUCAAUAAAUUAU
-------------..........................................(((((((((........(((.......)))...)))))))))....................... ( -16.80)
>consensus
UCAGUUCACUUGGAUUAC_________UU_______AUAUUCAUUACAACUUCCGAAUAGGGUCAUUUAUUUCGCUUUAUCUUCGAGCGACCCUCUUGACAUUUCUUUUCAAUGAAUUAU
......................................................(((.((.((((......((((((.......))))))......))))....)).))).......... (-10.18 = -10.62 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:21 2006