Locus 6651

Sequence ID	X_DroMel_CAF1
Location	16,601,599 – 16,601,700
Length	101
Max. P	0.595035

overview

Window 4

Location	16,601,599 – 16,601,700
Length	101
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	89.79
Mean single sequence MFE	-30.55
Consensus MFE	-24.51
Energy contribution	-24.32
Covariance contribution	-0.19
Combinations/Pair	1.04
Mean z-score	-1.50
Structure conservation index	0.80
SVM decision value	0.12
SVM RNA-class probability	0.595035
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16601599 101 - 22224390
AAGUCAAAAGUCAACACGUUUGACAUGGUCGACAUGCAGACGUUACCAUUGCGAAUGCCCAAGAA---UA---UCUGGGGGCCACCG-AAGUCAGAUGCAGA------UGCCAA
..(((....(((...(((((((.((((.....)))))))))))........((...((((.((..---..---.))..))))...))-......)))...))------)..... ( -24.60)
>DroSec_CAF1 13846 102 - 1
AAGUCAAAAGUCAACACGUUUGACAUGGUCGACAUGCAGACGUUACCAUUGCGAAUGCCCAAGAA---UA---UCUGGGGGCACCCGCAAGCCAGAUGCAGA------UGCCAA
..(((....(((...(((((((.((((.....))))))))))).....(((((..(((((.((..---..---.))..)))))..)))))....)))...))------)..... ( -32.80)
>DroEre_CAF1 14008 106 - 1
AAGUCAAAAGUGAACACGUUUGACAUGGUCGACAUGCAGACGUUACCAUUGCGAAUGCCCAAGAA---UA---UCUGGGGGCCCCCG--AGCCAGAUGCAGAUGCAGAUGCCAA
..(((...((((...(((((((.((((.....)))))))))))...))))(((..(((.......---.(---(((((((....)).--..)))))))))..))).)))..... ( -29.70)
>DroYak_CAF1 15302 112 - 1
AAGUCAAAAGUCAACACGUUUGACAUGGUCGACAUGCAGACGUUACCAUUGCGAAUGCCCAAGAAGAAUAUCUUCUGGGGGCCAACG--AGCCAGAUGCAGAUGCGGUUGCCAA
.........(.(((((((((((.((((.....)))))))))))..((((((((....((((.((((.....))))))))(((.....--.)))...)))).))).))))).).. ( -35.10)
>consensus
AAGUCAAAAGUCAACACGUUUGACAUGGUCGACAUGCAGACGUUACCAUUGCGAAUGCCCAAGAA___UA___UCUGGGGGCCACCG__AGCCAGAUGCAGA______UGCCAA
...............(((((((.((((.....))))))))))).....(((((....((((.((.........))))))(((........)))...)))))............. (-24.51 = -24.32 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:14 2006