| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,582,721 – 16,582,830 |
| Length | 109 |
| Max. P | 0.624435 |
| Location | 16,582,721 – 16,582,830 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 81.02 |
| Mean single sequence MFE | -28.50 |
| Consensus MFE | -17.95 |
| Energy contribution | -19.73 |
| Covariance contribution | 1.79 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.624435 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16582721 109 + 22224390 ACAAAAGUGAAGAGGUGUGGGAAAUUCCCUUUGGAAGUCGAAGAUAAG----CUUUGAUAAAAUCCGAAAGCUGCACGG------AGCUCAAUGAAAGUGCGAGUCAGCACUUAUUUUU ..((((((((.((((((((((.....)))((((((.(((((((.....----)))))))....))))))....))))..------..))).......((((......)))))))))))) ( -28.40) >DroEre_CAF1 7525 112 + 1 --AAAAGUGAAGAGGUGCGGGAAACUCCCU-UGCAAGUCGGAGAUAAACUGACUUUGAUAAAAUCCAUGAGUUGA-UGGAAAAAUAACUCAAUGAAAGUGCGAGUCAGCAGUUCUU--- --.......(((((.((((((.....)))(-((((((((((.......))))))...........(((((((((.-(.....).)))))).)))....)))))....))).)))))--- ( -29.10) >DroYak_CAF1 7262 115 + 1 --AAAUGUGAAGAGGUGUGGGAAAUUCCCU-UGGAAGUCGGAGAUAAACUGACUUUGAUAAAAUCCGAGUGUUGA-UGGAAAAAUAACUCAAUGAAAGUGCGAGUCAGCAGUUCUUCUU --......((((((.((((((.....))).-(.((((((((.......)))))))).).....((((........-))))......((((.((....))..))))..))).)))))).. ( -28.00) >consensus __AAAAGUGAAGAGGUGUGGGAAAUUCCCU_UGGAAGUCGGAGAUAAACUGACUUUGAUAAAAUCCGAGAGUUGA_UGGAAAAAUAACUCAAUGAAAGUGCGAGUCAGCAGUUCUU_UU ........((((((.((((((.....))).......(((((((.........)))))))....((((.........))))......((((.((....))..))))..))).)))))).. (-17.95 = -19.73 + 1.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:07 2006