| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,578,078 – 16,578,187 |
| Length | 109 |
| Max. P | 0.664438 |
| Location | 16,578,078 – 16,578,187 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 83.29 |
| Mean single sequence MFE | -41.94 |
| Consensus MFE | -26.61 |
| Energy contribution | -27.10 |
| Covariance contribution | 0.49 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.664438 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16578078 109 + 22224390 CGACCUCGUUGUCCGGCGGCACUUCGGGCGGAAUCACAGGAGGAGUCAUCUCCGGUGGCAACAUCAUCAAGAAUGCCCAGAGUGCCACCUAUCUGCCACCCAAUGGCAA .(((......))).((.((((((..(((((...((......((((....))))((((....)))).....)).)))))..)))))).))....(((((.....))))). ( -45.60) >DroSec_CAF1 2306 108 + 1 CGACCUCGUUGUCCGGCGGCACCUCUGGCGGAAUCACCGGAGGAGUCAUCUCU-GUGGCACCAUUAUCAAGAAUGCUCAGAGUGCUACCUAUCUGCCACCCAAUGGCAA .......((..(..((.(((((((((((.(....).)))))))((.((.((((-(.((((.............))))))))))))).......)))).))..)..)).. ( -35.52) >DroSim_CAF1 2708 109 + 1 CGACCUCGUUGUCCGGCGGCACCUCUGGCGGAGUCGCCGGAGGAGUCAUCUCCGGUGGCACCAUUAUCAAGAAUGCCCAGAGUGCCACCUAUCUGCCACCCAAUGGCAA .(((......))).((.(((((.((((((((.(((((((((((.....))))))))))).))(((......)))).)))))))))).))....(((((.....))))). ( -47.70) >DroEre_CAF1 2821 109 + 1 CGACCUCGUCGUCCGGCGGCACCUCUGGCGGAAUCACUGGAGGAGUCAUCUCCAGUGGCACCAUCAUCAAGAAUGCCAAGAGCUCCGUCUAUCUGCCACCCAAUGGCAA .......(((((..((.((((.....((((((.((((((((((.....))))))))((((...((.....)).))))..))..))))))....)))).))..))))).. ( -41.40) >DroYak_CAF1 2611 109 + 1 CGACCUCGUCGUCCGGCGGCAGCUCUGGCGGAAUCGCCGGAGGAGUCAUCUCUGGUGGCACCAUCAUCAAGAAUGCCAAGAGCGCCGUCUAUCUGCCACCCAGUGGCAA ((((...))))...((((((.((((((((((..((((((((((.....))))))))))..)).((.....))..))).)))))))))))....((((((...)))))). ( -49.70) >DroAna_CAF1 1170 91 + 1 CCACCUCGGUCACCGGCGGCACCUCUGGCGGCGCCACC---------AUC----GUGGCCC-----ACAAGAACGCCCAGAGUGCCACUUAUCUGCCUCCCAACGGCAA .....((((...)))).(((((.(((((.((.(((((.---------...----)))))))-----.(......).)))))))))).......((((.......)))). ( -31.70) >consensus CGACCUCGUUGUCCGGCGGCACCUCUGGCGGAAUCACCGGAGGAGUCAUCUCCGGUGGCACCAUCAUCAAGAAUGCCCAGAGUGCCACCUAUCUGCCACCCAAUGGCAA ..............((.((((.(((((((((..((((.(((((.....))))).))))..)).((.....))..))).)))))))).))....(((((.....))))). (-26.61 = -27.10 + 0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:19:06 2006