Locus 6631

Sequence ID X_DroMel_CAF1
Location 16,528,693 – 16,528,813
Length 120
Max. P 0.777277
window10833

overview

Window 3

Location 16,528,693 – 16,528,813
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.03
Mean single sequence MFE -27.55
Consensus MFE -24.36
Energy contribution -24.30
Covariance contribution -0.06
Combinations/Pair 1.10
Mean z-score -1.72
Structure conservation index 0.88
SVM decision value 0.55
SVM RNA-class probability 0.777277
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16528693 120 + 22224390
CAUAAUAUCAAAUGCAUUUGCGAUUGAAAACUGCAUAGUCAAUGGGUGGAAAACUAACGGUGCAGCUGCUUCACCUUGACCUACACGACCACAAGUAACAGUGAGAUGCACAAUACACUC
.......((((.(((....))).))))....(((((.((((..(((((((...(....)..((....)))))))))))))((.(((.((.....))....)))))))))).......... ( -24.90)
>DroSec_CAF1 4440 120 + 1
CAUAAUAUCAAAUGCAUUUGCGAUUGAAAACUGCAUUGUCAAUGGGUGGAAAACUAACGGUGCAGCUGCUUCACCUUGACCUACACGACCACAAAUAACAGUGGGAUGCACAAUACACAC
.......((((.(((....))).))))....((((((((((..(((((((...(....)..((....)))))))))))))........((((........)))))))))).......... ( -29.10)
>DroSim_CAF1 4715 120 + 1
CAUAAUAUCAAACGCAUUUGCGAUUGAAAACUGCAUAGUCAAUGGGUGGAAAACUAACGGUGCAGCUGCUUCACCUUGACCUACACGACCACAAAUAACAGUGGGAUGCACAAUACACAC
.......((((.(((....))).))))....(((((.((((..(((((((...(....)..((....)))))))))))))........((((........)))).))))).......... ( -29.60)
>DroYak_CAF1 1371 117 + 1
CAC---AUCAAAUGUAUUCGCAAUUGAAAAGUGCAUAGUCAAUGGGUGGAAAACUAACGGUGCAGCUGCUUCACCUUGACCUACACAACCACAAAUAACAGUGAGAUGCACAAUACACAC
...---.((((.(((....))).))))...((((((.((((..(((((((...(....)..((....))))))))))))).........(((........)))..))))))......... ( -26.60)
>consensus
CAUAAUAUCAAAUGCAUUUGCGAUUGAAAACUGCAUAGUCAAUGGGUGGAAAACUAACGGUGCAGCUGCUUCACCUUGACCUACACGACCACAAAUAACAGUGAGAUGCACAAUACACAC
.......((((.(((....))).))))....(((((.((((..(((((((..((.....))((....)))))))))))))........((((........)))).))))).......... (-24.36 = -24.30 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:45 2006