| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,467,312 – 16,467,418 |
| Length | 106 |
| Max. P | 0.772527 |
| Location | 16,467,312 – 16,467,418 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.47 |
| Mean single sequence MFE | -21.60 |
| Consensus MFE | -18.67 |
| Energy contribution | -18.22 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.772527 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16467312 106 + 22224390 -GGCAAUUUACAGAUCGAAAUAAGUAAUUCUAGAUCAAUUCGACAGUAGAGUACUUAAGUGCUAACACAUUGACCGCAACUGUCUGCACAGCGACAGUGUAAACAA-------------A -((((((.............((((((.(((((..((.....))...))))))))))).(((....))))))).))(((.(((((.((...))))))))))......-------------. ( -21.30) >DroSec_CAF1 5420 108 + 1 -UGCAUUAUGAGAAUCGAAUUAAGUAAUUCCAGAUCAAAUCAAAAGCGGAGUACUUAAGUGCUAUCACAUUGACCGCAACUGUCUGCACAGCGACAGUGUAAACAAAA-----------A -(((....(((.....(((((....)))))....)))........(((((((((....))))).((.....)))))).((((((.((...))))))))))).......-----------. ( -22.50) >DroSim_CAF1 2282 120 + 1 CAGCAUUAUGAGAAUCGAAAUAAGUAAUUCCAGAUCAAAUCGAAAGCGGAGUACUUAAGUGAUAUCACAUUGACCGCAACUGUCUGCACAGCGACAGUGUAAACAAAAAAACAAAAAAAA ..((...(((.((((((...((((((.((((...((.....))....))))))))))..)))).)).))).....)).((((((.((...))))))))...................... ( -21.00) >consensus _AGCAUUAUGAGAAUCGAAAUAAGUAAUUCCAGAUCAAAUCGAAAGCGGAGUACUUAAGUGCUAUCACAUUGACCGCAACUGUCUGCACAGCGACAGUGUAAACAAAA___________A ..((................((((((.((((................)))))))))).(((....))).......)).((((((.((...))))))))...................... (-18.67 = -18.22 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:55 2006