Locus 6596

Sequence ID X_DroMel_CAF1
Location 16,466,411 – 16,466,531
Length 120
Max. P 0.555227
window10776

overview

Window 6

Location 16,466,411 – 16,466,531
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.89
Mean single sequence MFE -42.30
Consensus MFE -42.52
Energy contribution -42.30
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.35
Structure conservation index 1.01
SVM decision value 0.04
SVM RNA-class probability 0.555227
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16466411 120 - 22224390
CACAAGUCCUCCAGCCAGGUGUACGCCAUGAAGCGGCUGUCCAAAUUCGAGAUGAUGAAGCGACCGGACUCCGCGUUCUUCUGGGAGGAGCGACACAUUAUGGCGCACGCCAACUCCGAA
.................(((((.((((((((.((((..((((....(((...........)))..)))).))))(((((((...)))))))......)))))))).)))))......... ( -40.90)
>DroSec_CAF1 4556 120 - 1
CACAAGUCCUCCAGCCAGGUGUACGCCAUGAAGCGGCUGUCCAAAUUCGAGAUGAUGAAACGACCGGACUCCGCGUUCUUCUGGGAGGAGCGACACAUCAUGGCGCACGCCAACUCCGAA
.................(((((.((((((((.((((..((((....(((...........)))..)))).))))(((((((...)))))))......)))))))).)))))......... ( -42.90)
>DroSim_CAF1 1417 120 - 1
CACAAGUCCUCCAGCCAGGUGUACGCCAUGAAGCGGCUGUCCAAAUUCGAGAUGAUGAAGCGACCGGACUCCGCGUUCUUCUGGGAGGAGCGACACAUCAUGGCGCACGCCAACUCCGAA
.................(((((.((((((((.((((..((((....(((...........)))..)))).))))(((((((...)))))))......)))))))).)))))......... ( -43.10)
>consensus
CACAAGUCCUCCAGCCAGGUGUACGCCAUGAAGCGGCUGUCCAAAUUCGAGAUGAUGAAGCGACCGGACUCCGCGUUCUUCUGGGAGGAGCGACACAUCAUGGCGCACGCCAACUCCGAA
.................(((((.((((((((.((((..((((....(((...........)))..)))).))))(((((((...)))))))......)))))))).)))))......... (-42.52 = -42.30 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:52 2006