Locus 6593

Sequence ID X_DroMel_CAF1
Location 16,458,923 – 16,459,043
Length 120
Max. P 0.888595
window10772

overview

Window 2

Location 16,458,923 – 16,459,043
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 77.00
Mean single sequence MFE -24.68
Consensus MFE -14.82
Energy contribution -16.32
Covariance contribution 1.50
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 0.60
SVM decision value 0.95
SVM RNA-class probability 0.888595
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16458923 120 + 22224390
ACAUUUCCGAGUUCUACAUUCCAUUUUGCCUCAAAGGCAAAAUGUUUAAAAACCACGAUUUCAAAUGCUCAUCGCAGACCAAUUUGGAUCGGAAGUGGAAACUGAAACAGGAGACAGUAG
.(((((((((...........(((((((((.....)))))))))........(((.((((.....(((.....)))....))))))).)))))))))............(....)..... ( -31.90)
>DroSec_CAF1 9164 117 + 1
ACAUUUCCCAGUUUUACAUUCCAU-UUGCCUCAAAGGCAAAAUGUUUAAAAACCUUGAACUCAAAUGCUCAUCGCAGACCAAUUUGGAUCGGAUAUGGAAACUGAAACAU--GACAGUAG
.(((....(((((((....(((.(-(((((.....))))))..((((((.....)))))).....(((.....)))((((.....)).)))))....)))))))....))--)....... ( -25.50)
>DroEre_CAF1 9325 105 + 1
ACAUUUCUGAGUUUUAAUUUC-UU-UUGCCUCAAAGGCAAAAUGCUUAAAAA----AAAUUCAAAUGAUCAUCGUAGACCAAUUUGGAUCGGAACCGGAAACUGAAACAG--G-------
.((((((((.(((((......-((-(((((.....)))))))..........----..((((((((..((......))...)))))))).))))))))))).))......--.------- ( -21.50)
>DroYak_CAF1 9362 91 + 1
ACAUUUCUGAGUUUUACUUUCCAU-UUGCCUCAAAGGCAAAAUGUUUAAAAA-------------------CUGUAGACCAAUUUAGAUCGGAACUGGAAACUGAAACAG--G-------
..........((((((.(((((((-(((((.....))))))..((((.....-------------------(((..........)))....)))))))))).))))))..--.------- ( -19.80)
>consensus
ACAUUUCCGAGUUUUACAUUCCAU_UUGCCUCAAAGGCAAAAUGUUUAAAAA____GAAUUCAAAUGCUCAUCGCAGACCAAUUUGGAUCGGAACUGGAAACUGAAACAG__G_______
..........((((((.((((((..(((((.....)))))....................................((((.....)).)).....)))))).))))))............ (-14.82 = -16.32 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:46 2006