Locus 6570

Sequence ID X_DroMel_CAF1
Location 16,419,307 – 16,419,420
Length 113
Max. P 0.809728
window10732

overview

Window 2

Location 16,419,307 – 16,419,420
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.40
Mean single sequence MFE -33.50
Consensus MFE -28.22
Energy contribution -28.70
Covariance contribution 0.48
Combinations/Pair 1.06
Mean z-score -1.49
Structure conservation index 0.84
SVM decision value 0.64
SVM RNA-class probability 0.809728
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16419307 113 - 22224390
UCCUUCGACUCCUGAGCUCUUAACUCCAGGGACAUGCCA-CAAGGUUCCACUGUGCGCGUGUUUUCGUUCCGAGAGCUUAGACCCAAGGUC-CCUGGCUCAUCUCGUCACUUUUG-----
......(((..((((((((((.....(..((((((((((-((.(......))))).))))))))..)....))))))))))..(((.(...-.))))........))).......----- ( -34.70)
>DroSec_CAF1 39944 113 - 1
UCCUUCGACUCCUGAGCUCUUAACUCCAGGGACAUGCCA-CAAGGUUCCACUGUGCGCGUGUUUUCGUUCCGAGAGCUUAGACCCAAGGUC-CCUGGCUCAUCUCGUCACUUUUG-----
......(((..((((((((((.....(..((((((((((-((.(......))))).))))))))..)....))))))))))..(((.(...-.))))........))).......----- ( -34.70)
>DroSim_CAF1 36239 113 - 1
UCCUUCGACUCCUGAGCUCUUAACUCCAGGGACAUGCCA-CAAGGUUCCACUGUGCGCGUGUUUUCGUUCCGAGAGCUUAGACCCAAGGUC-CCUGGCUCAUCUCGUCACUUUUG-----
......(((..((((((((((.....(..((((((((((-((.(......))))).))))))))..)....))))))))))..(((.(...-.))))........))).......----- ( -34.70)
>DroYak_CAF1 37576 113 - 1
UCCUUCGACUCCUGAGCUCUUAACUCCAGGGACAUGCCA-CAAGGUUCCACUGUGCGCGUGUUUUCGUUCCGAGAGCUUAGACCCAAGGUC-CCUGGCUCAUCUCGUCACUUUUG-----
......(((..((((((((((.....(..((((((((((-((.(......))))).))))))))..)....))))))))))..(((.(...-.))))........))).......----- ( -34.70)
>DroAna_CAF1 42822 120 - 1
UCCUUCGACUUCUGCGAGCUCAACUCCAGGGAUAUGCCAUCAAGGCUCCACUGUGCGCGUGUUUUCGUUUCGAGAGCUUAGUCCCAAGGUCCCCUGGCUCAUCUCUUCUACGUCGCUUCA
.....((((..(((.(((.....))))))((((..((((....((..((..((.(.((..(((((((...)))))))...)).))).))..)).))))..)))).......))))..... ( -28.70)
>consensus
UCCUUCGACUCCUGAGCUCUUAACUCCAGGGACAUGCCA_CAAGGUUCCACUGUGCGCGUGUUUUCGUUCCGAGAGCUUAGACCCAAGGUC_CCUGGCUCAUCUCGUCACUUUUG_____
......(((..((((((((((.....(..((((((((((...((......)).)).))))))))..)....))))))))))..(((.((...)))))........)))............ (-28.22 = -28.70 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:10 2006